cellTree: Inference and visualisation of Single-Cell RNA-seq data as a hierarchical tree structure

This packages computes a Latent Dirichlet Allocation (LDA) model of single-cell RNA-seq data and builds a compact tree modelling the relationship between individual cells over time or space.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("cellTree")
AuthorDavid duVerle [aut, cre], Koji Tsuda [aut]
Bioconductor views BiomedicalInformatics CellBiology Clustering FunctionalGenomics GO GeneExpression GeneSetEnrichment GraphAndNetwork Microarray RNASeq Sequencing SystemsBiology TimeCourse Visualization
Date of publicationNone
MaintainerDavid duVerle <dave@cb.k.u-tokyo.ac.jp>
LicenseArtistic-2.0
Version1.6.0
http://tsudalab.org

View on Bioconductor

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