cellTree: Inference and visualisation of Single-Cell RNA-seq data as a hierarchical tree structure

This packages computes a Latent Dirichlet Allocation (LDA) model of single-cell RNA-seq data and builds a compact tree modelling the relationship between individual cells over time or space.

Package details

AuthorDavid duVerle [aut, cre], Koji Tsuda [aut]
Bioconductor views BiomedicalInformatics CellBiology Clustering FunctionalGenomics GO GeneExpression GeneSetEnrichment GraphAndNetwork ImmunoOncology Microarray RNASeq Sequencing SystemsBiology TimeCourse Visualization
MaintainerDavid duVerle <dave@cb.k.u-tokyo.ac.jp>
URL http://tsudalab.org
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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cellTree documentation built on Nov. 8, 2020, 5:05 p.m.