cellTree: Inference and visualisation of Single-Cell RNA-seq data as a hierarchical tree structure

This packages computes a Latent Dirichlet Allocation (LDA) model of single-cell RNA-seq data and builds a compact tree modelling the relationship between individual cells over time or space.

Package details

AuthorDavid duVerle [aut, cre], Koji Tsuda [aut]
Bioconductor views BiomedicalInformatics CellBiology Clustering FunctionalGenomics GO GeneExpression GeneSetEnrichment GraphAndNetwork Microarray RNASeq Sequencing SystemsBiology TimeCourse Visualization
MaintainerDavid duVerle <[email protected]>
URL http://tsudalab.org
Package repositoryView on Bioconductor
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cellTree documentation built on Nov. 1, 2018, 3:32 a.m.