Description Usage Arguments Value Examples

Produces a table of input cells ranked by their position in the backbone tree.

1 | ```
cell.ordering.table(b.tree, write.to.tex.file = NULL)
``` |

`b.tree` |
An igraph backbone tree, as returned by |

`write.to.tex.file` |
Boolean (optional). If not |

List of all cells, ranked by position in backbone tree, along with topic information.

1 2 3 4 5 6 7 8 9 10 11 12 13 14 | ```
# Load pre-computed LDA model for skeletal myoblast RNA-Seq data from HSMMSingleCell package:
data(HSMM_lda_model)
# Recover sampling time (in days) for each cell:
library(HSMMSingleCell)
data(HSMM_sample_sheet)
days.factor = HSMM_sample_sheet$Hours
days = as.numeric(levels(days.factor))[days.factor]
# Compute near-optimal backbone tree:
b.tree = compute.backbone.tree(HSMM_lda_model, days)
# Load pre-computed LDA model for skeletal myoblast RNA-Seq data from HSMMSingleCell package:
temp.output = tempfile()
cell.ordering.table(b.tree, write.to.tex.file = temp.output)
``` |

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