kroganlab/artMS: Analytical R tools for Mass Spectrometry

artMS provides a set of tools for the analysis of proteomics label-free datasets. It takes as input the MaxQuant search result output (evidence.txt file) and performs quality control, relative quantification using MSstats, downstream analysis and integration. artMS also provides a set of functions to re-format and make it compatible with other analytical tools, including, SAINTq, SAINTexpress, Phosfate, and PHOTON.

Getting started

Package details

AuthorDavid Jimenez-Morales, Alexandre Rosa Campos, John Von Dollen.
Bioconductor views Annotation BiomedicalInformatics Clustering DifferentialExpression GeneSetEnrichment MassSpectrometry Normalization Proteomics QualityControl SystemsBiology
MaintainerDavid Jimenez-Morales <[email protected]>
LicenseGPL (>= 3) + file LICENSE
Version1.0.1
URL https://github.com/biodavidjm/artMS
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("kroganlab/artMS")
kroganlab/artMS documentation built on Nov. 18, 2018, 3:11 p.m.