kroganlab/artMS: Analytical R tools for Mass Spectrometry

artMS provides a set of tools for the analysis of proteomics label-free datasets. It takes as input the MaxQuant search result output (evidence.txt file) and performs quality control, relative quantification using MSstats, downstream analysis and integration. artMS also provides a set of functions to re-format and make it compatible with other analytical tools, including, SAINTq, SAINTexpress, Phosfate, and PHOTON. Check []( for details.

Getting started

Package details

Bioconductor views Annotation BiomedicalInformatics Clustering DifferentialExpression GeneSetEnrichment ImmunoOncology MassSpectrometry MultipleComparison Normalization Proteomics QualityControl SystemsBiology
MaintainerDavid Jimenez-Morales <>
LicenseGPL (>= 3) + file LICENSE
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
kroganlab/artMS documentation built on May 18, 2021, 4:17 p.m.