artMS provides a set of tools for the analysis of proteomics label-free datasets. It takes as input the MaxQuant search result output (evidence.txt file) and performs quality control, relative quantification using MSstats, downstream analysis and integration. artMS also provides a set of functions to re-format and make it compatible with other analytical tools, including, SAINTq, SAINTexpress, Phosfate, and PHOTON. Check [http://artms.org](http://artms.org) for details.
|Bioconductor views||Annotation BiomedicalInformatics Clustering DifferentialExpression GeneSetEnrichment ImmunoOncology MassSpectrometry MultipleComparison Normalization Proteomics QualityControl SystemsBiology|
|License||GPL (>= 3) + file LICENSE|
|Package repository||View on GitHub|
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