artmsFilterEvidenceContaminants: Remove contaminants and empty proteins from the MaxQuant...
In kroganlab/artMS: Analytical R tools for Mass Spectrometry
View source: R/MSstats_functions.R
artmsFilterEvidenceContaminants R Documentation
Remove contaminants and empty proteins from the MaxQuant evidence file
Description
Remove contaminants and erronously identified 'reverse'
sequences by MaxQuant, in addition to empty protein ids
Usage
artmsFilterEvidenceContaminants(x, verbose = TRUE)
Arguments
x
(data.frame) of the Evidence file
verbose
(logical) TRUE (default) shows function messages
Value
(data.frame) without REV__ and CON__ Protein ids
Examples
ef <- artmsFilterEvidenceContaminants(x = artms_data_ph_evidence)
kroganlab/artMS documentation built on July 7, 2023, 5:35 a.m.
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View source: R/MSstats_functions.R
| artmsFilterEvidenceContaminants | R Documentation |
Remove contaminants and empty proteins from the MaxQuant evidence file
Description
Remove contaminants and erronously identified 'reverse' sequences by MaxQuant, in addition to empty protein ids
Usage
artmsFilterEvidenceContaminants(x, verbose = TRUE)
Arguments
x |
(data.frame) of the Evidence file |
verbose |
(logical) |
Value
(data.frame) without REV__ and CON__ Protein ids
Examples
ef <- artmsFilterEvidenceContaminants(x = artms_data_ph_evidence)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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