artmsSILACtoLong: Convert the SILAC evidence file to MSstats format

In kroganlab/artMS: Analytical R tools for Mass Spectrometry

Convert the SILAC evidence file to MSstats format

Description

Converting the evidence file from a SILAC search to a format compatible with MSstats. It basically modifies the Raw.files adding the Heavy and Light label

Usage

artmsSILACtoLong(evidence_file, output = NULL, verbose = TRUE)

Arguments

evidence_file	(char) Text filepath to the evidence file
output	(char) Text filepath of the output name. If NULL it does not write the output
verbose	(logical) TRUE (default) shows function messages

Value

(data.frame) with SILAC data processed for MSstats (and output file)

Examples

## Not run: 
evidence2silac <- artmsSILACtoLong(evidence_file = "silac.evicence.txt",
                                   output = "silac-evidence.txt")

## End(Not run)

kroganlab/artMS documentation built on July 7, 2023, 5:35 a.m.