artmsSILACtoLong: Convert the SILAC evidence file to MSstats format

View source: R/MSstats_functions.R

artmsSILACtoLongR Documentation

Convert the SILAC evidence file to MSstats format

Description

Converting the evidence file from a SILAC search to a format compatible with MSstats. It basically modifies the Raw.files adding the Heavy and Light label

Usage

artmsSILACtoLong(evidence_file, output = NULL, verbose = TRUE)

Arguments

evidence_file

(char) Text filepath to the evidence file

output

(char) Text filepath of the output name. If NULL it does not write the output

verbose

(logical) TRUE (default) shows function messages

Value

(data.frame) with SILAC data processed for MSstats (and output file)

Examples

## Not run: 
evidence2silac <- artmsSILACtoLong(evidence_file = "silac.evicence.txt",
                                   output = "silac-evidence.txt")

## End(Not run)

kroganlab/artMS documentation built on July 7, 2023, 5:35 a.m.