artmsPhotonOutput: Generate PHOTON Input file

In kroganlab/artMS: Analytical R tools for Mass Spectrometry

Generate PHOTON Input file

Description

It takes as input the imputedL2fcExtended.txt results generated by the artmsAnalysisQuantifications() function and generates the PHOTON input file. Please, notice that the only species suported by PHOTON is humans.

Usage

artmsPhotonOutput(inputFile, output_dir = ".", verbose = TRUE)

Arguments

inputFile	(char) the imputedL2fcExtended.txt file name and location
output_dir	(char) Name of the folder to output results (Default: current. Recommended: "photon_input_files" or similar)
verbose	(logical) TRUE (default) to show function messages

Value

Multiple output files (inputs of phosfate)

Examples

## Not run: 
artmsPhotonOutput(inputFile)

## End(Not run)

kroganlab/artMS documentation built on July 7, 2023, 5:35 a.m.