API for kroganlab/artMS
Analytical R tools for Mass Spectrometry

Global functions
Extras.annotate Source code
MQ.msstats Man page Source code
MQutil.MISTINTformat Source code
MQutil.MISTformat Man page Source code
MQutil.MaxQToSaint Man page Source code
MQutil.ProteinToSiteConversion Man page Source code
MQutil.SILACToLong Man page Source code
MQutil.annotate Man page Source code
MQutil.combine_sq_values Source code
MQutil.concat Man page Source code
MQutil.dataPlots Source code
MQutil.getKeys Source code
MQutil.mapSitesBack Man page Source code
MQutil.plotHeat Source code
MQutil.plotHeatmap Source code
MQutil.replicatePlots Source code
MQutil.sampleQuant Man page Source code
MQutil.simplify Source code
MQutil.spectralCounts Man page Source code
MaxQToSaint Man page Source code
aggregateData Source code
avg_intensity_RT Man page Source code
castMaxQToWide Source code
castMaxQToWidePTM Source code
checkDir Source code
checkIfFile Man page Source code
cleanMissingMaxQEntries Source code
convertDataLongToMss Source code
corrPlot Source code
dataToMSSFormat Source code
explodeMaxQProteinGroups Source code
fillMissingMaxQEntries Source code
filterData Source code
filterMaxqData Source code
filterNumUniqPep Man page Source code
flattenKeysTechRepeats Source code
flattenMaxQTechRepeats Source code
getFileNameWithoutLabel Source code
getIsotopeLabel Source code
interaction_overlap Man page Source code
is.uniprotAc Source code
logScale Source code
meltMaxQToLong Source code
mergeMaxQDataWithKeys Man page Source code
mq2mss Man page Source code
mq2mss_PTM Man page Source code
msstats_summary Man page Source code
myNormalizeMedianValues Source code
na.replace Source code
naMax Source code
normalizeData Source code
normalizePerCondition Source code
normalizeSingle Source code
normalizeToReference Source code
peptideDistribution Source code
peptideIntensityPerFile Source code
plotHeat Source code
plotVenn Source code
plotVenn2 Source code
prettyPrintHeatmapLabels Source code
proportionPlot Source code
read_evidence_file Man page Source code
removeMaxQProteinGroups Source code
resultsHeatmap Man page Source code
resultsWide Man page Source code
runMSstats Source code
sampleCorrelationHeatmap Source code
samplePeptideBarplot Source code
select_ref Man page Source code
significantHits Source code
simplifyAggregate Source code
simplifyOutput Source code
trim Source code
unifyColumnNames Source code
volcanoPlot Man page Source code
writeExtras Source code
kroganlab/artMS documentation built on April 3, 2018, 4:06 p.m.