API for kroganlab/artMS
Analytical R tools for Mass Spectrometry

Global functions
Extras.annotate Source code
MQutil.MISTINTformat Source code
MQutil.MISTformat Man page Source code
MQutil.MaxQToSaint Man page Source code
MQutil.ProteinToSiteConversion Man page Source code
MQutil.SILACToLong Man page Man page Source code Source code
MQutil.annotate Man page Source code
MQutil.combine_sq_values Source code
MQutil.concat Man page Source code
MQutil.dataPlots Source code
MQutil.getKeys Source code
MQutil.mapSitesBack Man page Source code
MQutil.plotHeat Source code
MQutil.plotHeatmap Source code
MQutil.replicatePlots Source code
MQutil.resultsWide Man page Source code
MQutil.sampleQuant Man page Source code
MQutil.simplify Source code
MQutil.spectralCounts Man page Source code
MaxQToSaint Man page Source code
avg_intensity_RT Man page Source code
castMaxQToWide Man page Source code
castMaxQToWidePTM Man page Source code
changeColumnName Man page Source code
checkDir Source code
checkIfFile Man page Source code
corrPlot Source code
filterData Man page Source code
filterMaxqData Man page Source code
filterNumUniqPep Man page Source code
getMSstatsFormat Man page Source code
interaction_overlap Man page Source code
isEvidenceNewVersion Man page Source code
main Man page Source code
mergeMaxQDataWithKeys Man page Source code
mq2mss Man page Source code
mq2mss_PTM Man page Source code
msstats_summary Man page Source code
ph_evidence Man page
ph_keys Man page
plotHeat Man page Source code
plotVenn Source code
plotVenn2 Source code
prettyPrintHeatmapLabels Man page Source code
proportionPlot Source code
randomDF Man page
read_evidence_file Man page Man page Source code Source code
removeMaxQProteinGroups Man page Source code
resultsHeatmap Man page Source code
resultsWide Man page Source code
runMSstats Man page Source code
sampleCorrelationHeatmap Man page Source code
samplePeptideBarplot Man page Source code
select_ref Man page Source code
significantHits Man page Source code
trim Man page Source code
unifyColumnNames Source code
volcanoPlot Man page Man page Source code Source code
writeContrast Man page Source code
writeExtras Man page Source code
kroganlab/artMS documentation built on Aug. 17, 2018, 5:31 a.m.