Files in kroganlab/artMS
Analytical R tools for Mass Spectrometry

.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
NEWS
R/MSstats_functions.R R/analysisQuantifications.R R/annotations.R R/avg_intensity_RT.R R/checkIfFile.R R/data.R R/enrichments.R R/evidenceToSAINTqFormat.R R/evidenceToSaintExpressFormat.R R/getMSstatsformat.R R/main.R R/metabolomics.R R/msstat_summary.R R/otherApps.R R/plots.R R/proteinToSiteConversion.R R/qualityControlEvidenceBasic.R R/qualityControlEvidenceExtended.R R/qualityControlMetabolomics.R R/qualityControlSummaryExtended.R R/replicatePlots.R R/runMSstats.R R/writeExtras.R README.md
data/artms_config.RData
data/artms_data_corum_mito_database.RData
data/artms_data_pathogen_LPN.RData
data/artms_data_pathogen_TB.RData
data/artms_data_ph_evidence.RData
data/artms_data_ph_keys.RData
data/artms_data_ph_msstats_results.RData
data/artms_data_randomDF.RData
inst/extdata/artms_config.yaml
inst/extdata/createData.R man/artmsAnalysisQuantifications.Rd man/artmsAnnotateSpecie.Rd man/artmsAnnotationUniprot.Rd man/artmsAvgIntensityRT.Rd man/artmsChangeColumnName.Rd man/artmsConvertMetabolomics.Rd man/artmsDataPlots.Rd man/artmsEnrichLog2fc.Rd man/artmsEnrichProfiler.Rd man/artmsEvidenceToSAINTq.Rd man/artmsEvidenceToSaintExpress.Rd man/artmsFilterEvidenceContaminants.Rd man/artmsGeneratePhSiteExtended.Rd man/artmsIsEvidenceNewVersion.Rd man/artmsMapUniprot2Entrez.Rd man/artmsMergeEvidenceAndKeys.Rd man/artmsMsstatsSummary.Rd man/artmsPhosfateOutput.Rd man/artmsPhotonOutput.Rd man/artmsPlotHeatmapQuant.Rd man/artmsProtein2SiteConversion.Rd man/artmsQualityControlEvidenceBasic.Rd man/artmsQualityControlEvidenceExtended.Rd man/artmsQualityControlMetabolomics.Rd man/artmsQualityControlSummaryExtended.Rd man/artmsQuantification.Rd man/artmsReplicatePlots.Rd man/artmsResultsWide.Rd man/artmsSILACtoLong.Rd man/artmsSpectralCounts.Rd man/artmsVolcanoPlot.Rd man/artmsWriteConfigYamlFile.Rd man/artms_config.Rd man/artms_data_corum_mito_database.Rd man/artms_data_pathogen_LPN.Rd man/artms_data_pathogen_TB.Rd man/artms_data_ph_evidence.Rd man/artms_data_ph_keys.Rd man/artms_data_ph_msstats_results.Rd man/artms_data_randomDF.Rd tests/testthat.R tests/testthat/test-evidence.R vignettes/artMS_vignette.Rmd
kroganlab/artMS documentation built on Nov. 18, 2018, 3:11 p.m.