psygenet2r: psygenet2r - An R package for querying PsyGeNET and to perform comorbidity studies in psychiatric disorders

Package to retrieve data from PsyGeNET database (www.psygenet.org) and to perform comorbidity studies with PsyGeNET's and user's data.

AuthorAlba Gutierrez-Sacristan [aut], Carles Hernandez-Ferrer [cre]
Date of publicationNone
MaintainerAlba Gutierrez-Sacristan <alba.gutierrez@upf.edu>
LicenseMIT + file LICENSE
Version1.7.2

View on Bioconductor

Functions

DataGeNET.Psy-class Man page
enrichedPD Man page
extract Man page
extract,DataGeNET.Psy-method Man page
extract,JaccardIndexPsy-method Man page
extractSentences Man page
extractSentences,DataGeNET.Psy-method Man page
geneAttrPlot Man page
getUMLs Man page
jaccardEstimation Man page
JaccardIndexPsy-class Man page
ndisease Man page
ndisease,DataGeNET.Psy-method Man page
ngene Man page
ngene,DataGeNET.Psy-method Man page
pantherGraphic Man page
plot,DataGeNET.Psy,ANY-method Man page
plot,JaccardIndexPsy,ANY-method Man page
psygenet2r Man page
psygenet2r-package Man page
psygenetDisease Man page
psygenetDiseaseSentences Man page
psygenetGene Man page
psygenetGeneSentences Man page
qr Man page
topAnatEnrichment Man page

Files

psygenet2r/DESCRIPTION
psygenet2r/LICENSE
psygenet2r/NAMESPACE
psygenet2r/NEWS
psygenet2r/R
psygenet2r/R/0_AllClasses.R psygenet2r/R/1_AllGenerics.R psygenet2r/R/DataGeNET_Psy-extract.R psygenet2r/R/DataGeNET_Psy-extractSentences.R psygenet2r/R/DataGeNET_Psy-ndisease.R psygenet2r/R/DataGeNET_Psy-ngene.R psygenet2r/R/DataGeNET_Psy-plot.R psygenet2r/R/DataGeNET_Psy-show.R psygenet2r/R/JaccardIndexPsy-extract.R psygenet2r/R/JaccardIndexPsy-plot.R psygenet2r/R/JaccardIndexPsy-show.R psygenet2r/R/ListPsyGeNETIds.R psygenet2r/R/check_database.R psygenet2r/R/check_genes.R psygenet2r/R/disGeNET.R psygenet2r/R/diseaseNameMapping.R psygenet2r/R/enrichedPD.R psygenet2r/R/geneAttrPlot.R psygenet2r/R/getUMLs.R psygenet2r/R/getUrl.R psygenet2r/R/jaccardEstimation.R psygenet2r/R/pantherGraphicCorrect.R psygenet2r/R/psyGenDisId.R psygenet2r/R/psygenet2r.R psygenet2r/R/psygenetAll.R psygenet2r/R/psygenetDisease.R psygenet2r/R/psygenetDiseaseSentences.R psygenet2r/R/psygenetGene.R psygenet2r/R/psygenetGeneSentences.R psygenet2r/R/qr.R psygenet2r/R/topAnatEnrichment.R
psygenet2r/build
psygenet2r/build/vignette.rds
psygenet2r/data
psygenet2r/data/qr.rda
psygenet2r/inst
psygenet2r/inst/doc
psygenet2r/inst/doc/caseStudy.R
psygenet2r/inst/doc/caseStudy.Rnw
psygenet2r/inst/doc/caseStudy.pdf
psygenet2r/inst/doc/generalOverview.R
psygenet2r/inst/doc/generalOverview.Rnw
psygenet2r/inst/doc/generalOverview.pdf
psygenet2r/inst/extdata
psygenet2r/inst/extdata/ensemble2gene_symbol.tsv
psygenet2r/inst/extdata/psychiatricDisordersPubmed.csv
psygenet2r/inst/extdata/topAnat.RData
psygenet2r/man
psygenet2r/man/DataGeNET.Psy-class.Rd psygenet2r/man/JaccardIndexPsy-class.Rd psygenet2r/man/enrichedPD-methods.Rd psygenet2r/man/extract.Rd psygenet2r/man/extractSentences.Rd psygenet2r/man/geneAttrPlot-methods.Rd psygenet2r/man/getUMLs-methods.Rd psygenet2r/man/jaccardEstimation-methods.Rd psygenet2r/man/ndisease.Rd psygenet2r/man/ngene.Rd psygenet2r/man/pantherGraphic-methods.Rd psygenet2r/man/plot-DataGeNET.Psy-ANY-method.Rd psygenet2r/man/plot-JaccardIndexPsy-ANY-method.Rd psygenet2r/man/psygenet2r.Rd psygenet2r/man/psygenetDisease-methods.Rd psygenet2r/man/psygenetDiseaseSentences.Rd psygenet2r/man/psygenetGene-methods.Rd psygenet2r/man/psygenetGeneSentences.Rd psygenet2r/man/qr.Rd psygenet2r/man/topAnatEnrichment-methods.Rd
psygenet2r/tests
psygenet2r/tests/testthat
psygenet2r/tests/testthat.R
psygenet2r/tests/testthat/test_basic_disease.R
psygenet2r/tests/testthat/test_basic_gene.R
psygenet2r/vignettes
psygenet2r/vignettes/caseStudy.Rnw
psygenet2r/vignettes/generalOverview.Rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.