Man pages for psygenet2r
psygenet2r - An R package for querying PsyGeNET and to perform comorbidity studies in psychiatric disorders
| DataGeNET.Psy-class | Class DataGeNET.Psy |
| enrichedPD-methods | Enrichment of a user's input (genes) in PsyGeNET's diseases. |
| extract | Raw data from 'DataGeNET.Psy' and 'JaccardIndexPsy'. |
| extractSentences | Method to obtain the sentences that support a gene-disease... |
| geneAttrPlot-methods | Ploting the relation between genes and disease-categories |
| getUMLs-methods | Query PsyGeNET for given gene(s) and generates an... |
| jaccardEstimation-methods | Calculation of the Jaccard Index between ideseases |
| JaccardIndexPsy-class | Class JaccardIndexPsy |
| ndisease | Getter from 'DataGeNET.Psy'. |
| ngene | Getter from 'DataGeNET.Psy'. |
| pantherGraphic-methods | Query PsyGeNET for given genes and creates a representation... |
| plot-DataGeNET.Psy-ANY-method | Plots the content of a 'DataGeNET.Psy' object |
| plot-JaccardIndexPsy-ANY-method | Plot the content of a 'JaccardIndexPsy' object. |
| psygenet2r | psygenet2r: Package to query PsyGeNET database and to perform... |
| psygenetDisease-methods | Query PsyGeNET for given disease(s) and generates an... |
| psygenetDiseaseSentences | Query PsyGeNET for given disease(s) and extract the pmids... |
| psygenetGene-methods | Query PsyGeNET for given gene(s) and generates an... |
| psygenetGeneSentences | Query PsyGeNET for given gene(s) and extract the pmids... |
| qr | 'DataGeNET.Psy' obtained from quering PsyGeNET for gene... |
| topAnatEnrichment-methods | Enrichment of a user's input (genes) in anatomical terms... |
| universe | Vector with gene universe for Jaccard Index |
