enrichedPD-methods: Enrichment of a user's input (genes) in PsyGeNET's diseases.

In psygenet2r: psygenet2r - An R package for querying PsyGeNET and to perform comorbidity studies in psychiatric disorders

Description

Test the enrichment of a given gene list on Psychiatric Disorders from PsyGeNET.

Usage

enrichedPD(gene, database = "ALL", verbose = FALSE, warnings = FALSE)

Arguments

gene	Name or vector of names (that can be both code or uml) to specific genes from PsyGeNET.
database	Name of the database that will be queried. It can take the values 'psycur15' to use data validated by experts for first release of PsyGeNET; 'psycur16' to use data validated by experts for second release of PsyGeNET; or 'ALL' to use both databases. Default 'ALL'.
verbose	By default FALSE. Change it to TRUE to get a on-time log from the function.
warnings	By default TRUE. Change it to FALSE to not see the warnings.

Value

A data.frame with the enricment at each Psychiatric Disorder

Examples

enrichedPD(c("ADCY2", "AKAP13", "ANK3"), "ALL")

psygenet2r documentation built on Jan. 31, 2021, 2 a.m.