CancerInSilico: An R interface for computational modeling of tumor progression

The CancerInSilico package provides an R interface for running mathematical models of tumor progresson. This package has the underlying models implemented in C++ and the output and analysis features implemented in R.

AuthorThomas D. Sherman, Raymond Cheng, Elana J. Fertig
Date of publicationNone
MaintainerThomas D. Sherman <tsherma4@jhu.edu>, Elana J. Fertig <ejfertig@jhmi.edu>
LicenseGPL (>= 2)
Version1.0.0

View on Bioconductor

Functions

CancerInSilico Man page
CancerInSilico-package Man page
CellModel-class Man page
getAxisAngle Man page
getAxisLength Man page
getCoordinates Man page
getCycleLengths Man page
getDensity Man page
getGrowthRates Man page
getNumberOfCells Man page
getParameters Man page
getRadii Man page
interactivePlot Man page
plotCells Man page
runCancerSim Man page
runDrasdoHohme Man page
show,CellModel-method Man page
timeToRow Man page

Files

CancerInSilico/.travis.yml
CancerInSilico/DESCRIPTION
CancerInSilico/LICENSE
CancerInSilico/NAMESPACE
CancerInSilico/R
CancerInSilico/R/CancerModels.R CancerInSilico/R/CellModel-class.R CancerInSilico/R/RcppExports.R CancerInSilico/R/package.R
CancerInSilico/appveyor.yml
CancerInSilico/build
CancerInSilico/build/vignette.rds
CancerInSilico/inst
CancerInSilico/inst/NEWS
CancerInSilico/inst/doc
CancerInSilico/inst/doc/CancerInSilico.R
CancerInSilico/inst/doc/CancerInSilico.Rmd
CancerInSilico/inst/doc/CancerInSilico.html
CancerInSilico/man
CancerInSilico/man/CancerInSilico.Rd CancerInSilico/man/CellModel-class.Rd CancerInSilico/man/getAxisAngle.Rd CancerInSilico/man/getAxisLength.Rd CancerInSilico/man/getCoordinates.Rd CancerInSilico/man/getCycleLengths.Rd CancerInSilico/man/getDensity.Rd CancerInSilico/man/getGrowthRates.Rd CancerInSilico/man/getNumberOfCells.Rd CancerInSilico/man/getParameters.Rd CancerInSilico/man/getRadii.Rd CancerInSilico/man/interactivePlot.Rd CancerInSilico/man/plotCells.Rd CancerInSilico/man/runCancerSim.Rd CancerInSilico/man/runDrasdoHohme.Rd CancerInSilico/man/show-CellModel-method.Rd CancerInSilico/man/timeToRow.Rd
CancerInSilico/src
CancerInSilico/src/Cell.cpp
CancerInSilico/src/Cell.h
CancerInSilico/src/CellModel.cpp
CancerInSilico/src/CellPopulation.cpp
CancerInSilico/src/CellPopulation.h
CancerInSilico/src/ExceptionHandling.h
CancerInSilico/src/Parameters.cpp
CancerInSilico/src/Parameters.h
CancerInSilico/src/Point.h
CancerInSilico/src/RcppExports.cpp
CancerInSilico/src/Simulation.cpp
CancerInSilico/src/Simulation.h
CancerInSilico/src/SpatialHash.h
CancerInSilico/src/test-Cell.cpp
CancerInSilico/src/test-CellPopulation.cpp
CancerInSilico/src/test-Parameters.cpp
CancerInSilico/src/test-SpatialHash.cpp
CancerInSilico/src/test-runner.cpp
CancerInSilico/tests
CancerInSilico/tests/testthat
CancerInSilico/tests/testthat.R
CancerInSilico/tests/testthat/test-cpp.R
CancerInSilico/tests/testthat/test_Model.R
CancerInSilico/vignettes
CancerInSilico/vignettes/CancerInSilico.Rmd
CancerInSilico/vignettes/ExampleRun.png
CancerInSilico/vignettes/References.bib

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