CancerInSilico: An R interface for computational modeling of tumor progression

The CancerInSilico package provides an R interface for running mathematical models of tumor progresson. This package has the underlying models implemented in C++ and the output and analysis features implemented in R.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("CancerInSilico")
AuthorThomas D. Sherman, Raymond Cheng, Elana J. Fertig
Bioconductor views BiomedicalInformatics CellBiology MathematicalBiology SystemsBiology
Date of publicationNone
MaintainerThomas D. Sherman <tsherma4@jhu.edu>, Elana J. Fertig <ejfertig@jhmi.edu>
LicenseGPL (>= 2)
Version1.2.0

View on Bioconductor

Functions

CancerInSilico Man page
CancerInSilico-package Man page
CellModel-class Man page
getAxisAngle Man page
getAxisLength Man page
getCoordinates Man page
getCycleLengths Man page
getDensity Man page
getGrowthRates Man page
getNumberOfCells Man page
getParameters Man page
getRadii Man page
interactivePlot Man page
plotCells Man page
runCancerSim Man page
runDrasdoHohme Man page
show,CellModel-method Man page
timeToRow Man page

Files

.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
R
R/CancerModels.R R/CellModel-class.R R/RcppExports.R R/package.R
appveyor.yml
build
build/vignette.rds
inst
inst/NEWS
inst/doc
inst/doc/CancerInSilico.R
inst/doc/CancerInSilico.Rmd
inst/doc/CancerInSilico.html
man
man/CancerInSilico.Rd man/CellModel-class.Rd man/getAxisAngle.Rd man/getAxisLength.Rd man/getCoordinates.Rd man/getCycleLengths.Rd man/getDensity.Rd man/getGrowthRates.Rd man/getNumberOfCells.Rd man/getParameters.Rd man/getRadii.Rd man/interactivePlot.Rd man/plotCells.Rd man/runCancerSim.Rd man/runDrasdoHohme.Rd man/show-CellModel-method.Rd man/timeToRow.Rd
src
src/Cell.cpp
src/Cell.h
src/CellModel.cpp
src/CellPopulation.cpp
src/CellPopulation.h
src/ExceptionHandling.h
src/Parameters.cpp
src/Parameters.h
src/Point.h
src/RcppExports.cpp
src/Simulation.cpp
src/Simulation.h
src/SpatialHash.h
src/test-Cell.cpp
src/test-CellPopulation.cpp
src/test-Parameters.cpp
src/test-SpatialHash.cpp
src/test-runner.cpp
tests
tests/testthat
tests/testthat.R tests/testthat/test-cpp.R tests/testthat/test_Model.R
vignettes
vignettes/CancerInSilico.Rmd
vignettes/ExampleRun.png
vignettes/References.bib

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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