API for CancerInSilico
An R interface for computational modeling of tumor progression

Global functions
CancerInSilico Man page
CancerInSilico-package Man page
CellModel-class Man page
CellType-class Man page
DrasdoHohmeModel-class Man page
Drug-class Man page
GeneExpressionParams-class Man page
OffLatticeModel-class Man page
Pathway-class Man page
calibratePathway Man page Source code
cellSummary Man page
cellSummary,CellModel-method Man page
checkDataSet Man page Source code
combineGeneExpression Man page Source code
cppRunModel Source code
getAxisAngle Man page
getAxisAngle,OffLatticeModel-method Man page
getAxisLength Man page
getAxisLength,OffLatticeModel-method Man page
getCellDistance Man page
getCellDistance,OffLatticeModel-method Man page
getCellPhase Man page
getCellPhase,OffLatticeModel-method Man page
getCellType Man page
getCellType,OffLatticeModel-method Man page
getCoordinates Man page
getCoordinates,OffLatticeModel-method Man page
getCycleLength Man page
getCycleLength,OffLatticeModel-method Man page
getDensity Man page
getDensity,OffLatticeModel-method Man page
getEntry Source code
getLocalDensity Man page
getLocalDensity,OffLatticeModel-method Man page
getMeanExp Man page Source code
getNumberOfCells Man page
getNumberOfCells,OffLatticeModel-method Man page
getRadius Man page
getRadius,OffLatticeModel-method Man page
getTrialAcceptRate Man page
getTrialAcceptRate,OffLatticeModel-method Man page
inSilicoCellModel Man page Source code
inSilicoGeneExpression Man page Source code
inSilicoPathways Man page
initialize,CellModel-method Man page
initialize,DrasdoHohmeModel-method Man page
initialize,OffLatticeModel-method Man page
initialize,Pathway-method Man page
interactivePlot Man page
interactivePlot,CellModel-method Man page
modCellTypes Man page
modDefault Man page
modDrugs Man page
modHighDensity Man page
modLargeRun Man page
modLongRun Man page
plotCells Man page
plotCells,OffLatticeModel-method Man page
pwyContactInhibition Man page
pwyGrowth Man page
pwyMitosis Man page
pwySPhase Man page
referenceGeneExpression Man page
run Man page
run,DrasdoHohmeModel-method Man page
run_catch_unit_tests Source code
run_cpp_unit_tests Source code
simulateMicroArray Man page Source code
simulatePathwayActivity Man page Source code
simulateWithLimmaVoom Man page Source code
simulateWithSplatter Man page Source code
voomErrorModel Man page Source code
CancerInSilico documentation built on May 2, 2018, 4:19 a.m.