GeneExpressionParams-class: GeneExpressionParams

In CancerInSilico: An R interface for computational modeling of tumor progression

Description

Parameters for simulating gene expression

Slots

sampleFreq

how often to generate data

RNAseq

generate RNA-seq data

singleCell

generate single cell data

nCells

number of cells to sample at each time point

nDummyGenes

number of dummy genes

dummyDist

function to determine expression of dummy genes

combineFUN

function used to combine gene expression data

randSeed

random seed

perError

error for normal error model

bcvCommon

error for voom error model

bcvDF

degrees of freedom for voom error model

dropoutPresent

whether to simulate dropout in single cell data

dropoutMid

parameter for dropout distribution

dropoutShape

parameter for dropout distribution

CancerInSilico documentation built on Nov. 8, 2020, 6:32 p.m.