Files in CancerInSilico

An R interface for computational modeling of tumor progression

README.md

NAMESPACE

DESCRIPTION

build/vignette.rds

src/RcppExports.cpp

src/RunModel.cpp

src/Makevars

src/test-runner.cpp

src/CellModels/DrasdoHohmeModel.cpp

src/CellModels/DrasdoHohmeModel.h

src/Core/Random.h

src/Core/Point.h

src/Core/CellPhase.h

src/Core/CellType.h

src/Core/Drug.h

src/Core/CellBasedModel.h

src/Core/CellType.cpp

src/Core/Random.cpp

src/Core/Cell.h

src/Core/CellBasedModel.cpp

src/Core/SquareLattice.h

src/Core/Lattice.h

src/Core/Drug.cpp

src/Core/Cell.cpp

src/Tests/catch.h

src/Tests/CellModels/test-DrasdoHohme.cpp

src/Tests/Core/test-Drug.cpp

src/Tests/Core/test-SquareLattice.cpp

src/Tests/Core/test-CellType.cpp

src/Tests/Core/test-Random.cpp

src/Tests/Core/test-Point.cpp

src/Tests/OffLatticeModel/test-OffLatticeRadiusSolver.cpp

src/Tests/OffLatticeModel/test-OffLatticeCell.cpp

src/OffLatticeModel/OffLatticeCellBasedModel.h

src/OffLatticeModel/OffLatticeRadiusSolver.h

src/OffLatticeModel/OffLatticeCell.cpp

src/OffLatticeModel/OffLatticeRadiusSolver.cpp

src/OffLatticeModel/OffLatticeCellBasedModel.cpp

src/OffLatticeModel/OffLatticeCell.h

data/ReferenceGeneExpression.RData

data/datalist

data/SampleModels.RData

data/SamplePathways.RData

R/class-Pathway.R R/class-DrasdoHohmeModel.R R/RcppExports.R R/GeneExpressionSimulation.R R/class-OffLatticeModel.R R/class-CellType.R R/documentation.R R/class-GeneExpressionParams.R R/class-Drug.R R/CellSimulation.R R/class-CellModel.R

vignettes/References.bib

vignettes/CancerInSilico.Rmd man/modLongRun.Rd man/pwyMitosis.Rd man/getCellPhase-methods.Rd man/getNumberOfCells-methods.Rd man/inSilicoGeneExpression.Rd man/modCellTypes.Rd man/initialize-CellModel-method.Rd man/getAxisAngle-methods.Rd man/CancerInSilico.Rd man/OffLatticeModel-class.Rd man/getDensity-methods.Rd man/simulateWithLimmaVoom.Rd man/getCellDistance-methods.Rd man/modDefault.Rd man/getAxisLength-methods.Rd man/inSilicoPathways.Rd man/CellType-class.Rd man/getRadius-methods.Rd man/modLargeRun.Rd man/getCellType-methods.Rd man/calibratePathway.Rd man/modHighDensity.Rd man/voomErrorModel.Rd man/combineGeneExpression.Rd man/interactivePlot-methods.Rd man/Drug-class.Rd man/plotCells-methods.Rd man/simulateWithSplatter.Rd man/simulateMicroArray.Rd man/getCycleLength-methods.Rd man/CellModel-class.Rd man/pwyContactInhibition.Rd man/checkDataSet.Rd man/getLocalDensity-methods.Rd man/run-methods.Rd man/cellSummary-methods.Rd man/modDrugs.Rd man/getTrialAcceptRate-methods.Rd man/Pathway-class.Rd man/getCoordinates-methods.Rd man/simulatePathwayActivity.Rd man/pwyGrowth.Rd man/inSilicoCellModel.Rd man/initialize-OffLatticeModel-method.Rd man/initialize-DrasdoHohmeModel-method.Rd man/getMeanExp.Rd man/referenceGeneExpression.Rd man/pwySPhase.Rd man/GeneExpressionParams-class.Rd man/DrasdoHohmeModel-class.Rd tests/testthat.R tests/testthat/test-RunCellSimulation.R tests/testthat/test-CreateCellModel.R tests/testthat/test-PathwayClass.R tests/testthat/test-GeneExpressionSimulation.R tests/testthat/test-cpp.R tests/testthat/test-AccessCellModel.R

inst/NEWS

inst/doc/CancerInSilico.R inst/doc/CancerInSilico.Rmd

inst/doc/CancerInSilico.html

CancerInSilico documentation built on Nov. 8, 2020, 6:32 p.m.