OncoScore: A tool to identify potentially oncogenic genes

OncoScore is a tool to measure the association of genes to cancer based on citation frequencies in biomedical literature. The score is evaluated from PubMed literature by dynamically updatable web queries.

AuthorLuca De Sano [aut], Carlo Gambacorti Passerini [ctb], Rocco Piazza [ctb], Daniele Ramazzotti [aut, cre], Roberta Spinelli [ctb]
Date of publicationNone
MaintainerDaniele Ramazzotti <daniele.ramazzotti@yahoo.com>
LicenseGPL-3
Version1.2.1
https://github.com/danro9685/OncoScore

View on Bioconductor

Files

OncoScore/DESCRIPTION
OncoScore/NAMESPACE
OncoScore/R
OncoScore/R/OncoScore.R OncoScore/R/data.R OncoScore/R/plot.R OncoScore/R/queries.R OncoScore/R/utils.R
OncoScore/build
OncoScore/build/vignette.rds
OncoScore/data
OncoScore/data/genes.RData
OncoScore/data/genes.txt
OncoScore/data/query.RData
OncoScore/data/query.timepoints.RData
OncoScore/data/timepoints.RData
OncoScore/inst
OncoScore/inst/NEWS.Rd
OncoScore/inst/doc
OncoScore/inst/doc/vignette.R
OncoScore/inst/doc/vignette.Rnw
OncoScore/inst/doc/vignette.pdf
OncoScore/man
OncoScore/man/compute.frequencies.scores.Rd OncoScore/man/compute.oncoscore.Rd OncoScore/man/compute.oncoscore.from.region.Rd OncoScore/man/compute.oncoscore.timeseries.Rd OncoScore/man/estimate.oncogenes.Rd OncoScore/man/genes.Rd OncoScore/man/get.genes.from.biomart.Rd OncoScore/man/get.list.from.xml.Rd OncoScore/man/get.pubmed.driver.analysis.Rd OncoScore/man/perform.query.Rd OncoScore/man/perform.query.timeseries.Rd OncoScore/man/plot.oncoscore.Rd OncoScore/man/plot.oncoscore.timeseries.Rd OncoScore/man/query.Rd OncoScore/man/query.timepoints.Rd OncoScore/man/timepoints.Rd OncoScore/man/try.scan.Rd
OncoScore/tests
OncoScore/tests/testthat
OncoScore/tests/testthat.R
OncoScore/tests/testthat/test_oncoscore.R
OncoScore/vignettes
OncoScore/vignettes/vignette.Rnw

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