plot.oncoscore.timeseries: plot.oncoscore.timeseries

In OncoScore: A tool to identify potentially oncogenic genes

Description

plot the OncoScore for a list of genes

Usage

## S3 method for class 'oncoscore.timeseries'
plot(
  x,
  gene.number = 5,
  incremental = FALSE,
  relative = FALSE,
  main = "OncoScore",
  xlab = "timepoints",
  ylab = "score",
  legend.pos = "top",
  file = NA,
  ...
)

Arguments

x	input data as result of the function compute.OncoScore
gene.number	number of genes to print
incremental	display the OncoScore increment
relative	dispaly the incrementa as relative value
main	the title
xlab	description of x asix (defaul score)
ylab	description of y asix (defaul genes)
legend.pos	Position of the legend
file	where to save the plot
...	additional parameter to pass to the lines function

Value

A plot

Examples

data(query.timepoints)
result = compute.oncoscore.timeseries(query.timepoints)
plot.oncoscore.timeseries(result)

OncoScore documentation built on Nov. 8, 2020, 5:18 p.m.