perform.query.from.region: perform.query.from.region

In OncoScore: A tool to identify potentially oncogenic genes

Description

Perform the query to PubMed on a given chromosomic region

Usage

perform.query.from.region(
  chromosome,
  start = NA,
  end = NA,
  gene.num.limit = 100
)

Arguments

chromosome	chromosome to be retireved
start	initial position to be used
end	final position to be used
gene.num.limit	A limit to the genes to be considered in the analysis; this is done to limit the number of queries to PubMed

Value

The frequencies of the genes in the cancer related documents and in all the documents retireved on PubMed

Examples

chromosome = 15
start = 200000
end = 300000

OncoScore documentation built on Nov. 8, 2020, 5:18 p.m.