ASAFE: Ancestry Specific Allele Frequency Estimation

Given admixed individuals' bi-allelic SNP genotypes and ancestry pairs (where each ancestry can take one of three values) for multiple SNPs, perform an EM algorithm to deal with the fact that SNP genotypes are unphased with respect to ancestry pairs, in order to estimate ancestry-specific allele frequencies for all SNPs.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("ASAFE")
AuthorQian Zhang <qszhang@uw.edu>
Bioconductor views BiomedicalInformatics ExperimentalDesign Genetics GenomeWideAssociation LinkageDisequilibrium SNP
Date of publicationNone
MaintainerQian Zhang <qszhang@uw.edu>
LicenseArtistic-2.0
Version1.2.0

View on Bioconductor

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.