ASAFE: Ancestry Specific Allele Frequency Estimation

Given admixed individuals' bi-allelic SNP genotypes and ancestry pairs (where each ancestry can take one of three values) for multiple SNPs, perform an EM algorithm to deal with the fact that SNP genotypes are unphased with respect to ancestry pairs, in order to estimate ancestry-specific allele frequencies for all SNPs.

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AuthorQian Zhang <>
Bioconductor views BiomedicalInformatics ExperimentalDesign Genetics GenomeWideAssociation LinkageDisequilibrium SNP
Date of publicationNone
MaintainerQian Zhang <>

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