messina: Single-gene classifiers and outlier-resistant detection of differential expression for two-group and survival problems.

Messina is a collection of algorithms for constructing optimally robust single-gene classifiers, and for identifying differential expression in the presence of outliers or unknown sample subgroups. The methods have application in identifying lead features to develop into clinical tests (both diagnostic and prognostic), and in identifying differential expression when a fraction of samples show unusual patterns of expression.

AuthorMark Pinese [aut], Mark Pinese [cre], Mark Pinese [cph]
Date of publicationNone
MaintainerMark Pinese <m.pinese@garvan.org.au>
LicenseEPL (>= 1.0)
Version1.10.0

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Files in this package

messina/DESCRIPTION
messina/NAMESPACE
messina/R
messina/R/AllClasses.R messina/R/AllGenerics.R messina/R/RcppExports.R messina/R/messina-package.R messina/R/messina.R messina/R/messinaSurv.R messina/R/messinaTopResults.R messina/R/plot-methods.R messina/R/show-methods.R messina/R/tcga_kirc_example-data.R
messina/REFERENCES.bib
messina/build
messina/build/vignette.rds
messina/data
messina/data/tcga_kirc_example.rda
messina/inst
messina/inst/CITATION
messina/inst/NEWS
messina/inst/doc
messina/inst/doc/messina.R
messina/inst/doc/messina.Rnw
messina/inst/doc/messina.pdf
messina/man
messina/man/MessinaFits-class.Rd messina/man/MessinaParameters-class.Rd messina/man/MessinaResult-class.Rd messina/man/messina-package.Rd messina/man/messina.Rd messina/man/messinaDE.Rd messina/man/messinaSurv.Rd messina/man/messinaTopResults.Rd messina/man/plot-MessinaClassResult-missing-method.Rd messina/man/plot-MessinaSurvResult-missing-method.Rd messina/man/show-methods.Rd messina/man/tcga_kirc_example.Rd
messina/src
messina/src/Classifier.cpp
messina/src/Classifier.h
messina/src/Data.cpp
messina/src/Data.h
messina/src/RInterrupt.h
messina/src/RcppExports.cpp
messina/src/crossval.cpp
messina/src/crossval.h
messina/src/errors.cpp
messina/src/errors.h
messina/src/init.cpp
messina/src/messinaExtern.cpp
messina/src/types.h
messina/vignettes
messina/vignettes/messina.Rnw

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