MessinaFits-class: The MessinaFits class
In messina: Single-gene classifiers and outlier-resistant detection of differential expression for two-group and survival problems
Description
Slots
Author(s)
See Also
Description
A class to store the individual messina or messinaSurv fits
to a dataset.
Slots
summarya data frame containing summary performance measures
for each feature, with features in rows, and columns:
- "passed"
did this feature pass the user requirements? A
boolean.
- "type"
the type of classifier that was fit
- "threshold"
the threshold expression value of the classifier
- "posk"
the direction of the classifier
- "ptrue"
the fraction of bootstrap replicates in which a
classifier was successfully trained.
- "margin"
the expression margin of the classifier
objective_surfacesa list of length equal to the number of features.
each list entry contains a data frame of the objective function values
at each threshold (cutoff) tested. Currently only populated for
messinaSurv fits, with columns cutoff, objective.
Author(s)
Mark Pinese m.pinese@garvan.org.au
See Also
messina documentation built on Nov. 8, 2020, 7:47 p.m.
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Description Slots Author(s) See Also
Description
A class to store the individual messina or messinaSurv fits to a dataset.
Slots
summarya data frame containing summary performance measures for each feature, with features in rows, and columns:
- "passed"
did this feature pass the user requirements? A boolean.
- "type"
the type of classifier that was fit
- "threshold"
the threshold expression value of the classifier
- "posk"
the direction of the classifier
- "ptrue"
the fraction of bootstrap replicates in which a classifier was successfully trained.
- "margin"
the expression margin of the classifier
objective_surfacesa list of length equal to the number of features. each list entry contains a data frame of the objective function values at each threshold (cutoff) tested. Currently only populated for messinaSurv fits, with columns cutoff, objective.
Author(s)
Mark Pinese m.pinese@garvan.org.au
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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