psichomics: Graphical Interface for Alternative Splicing Quantification, Analysis and Visualisation
Version 1.2.1

Interactive R package with a Shiny-based graphical interface for the quantification, analysis and visualisation of alternative splicing data from The Cancer Genome Atlas (TCGA) or the Genotype-Tissue Expression (GTEx) project. This tool interactively performs survival, principal components and differential splicing analyses with direct incorporation of clinical features (such as tumour stage or survival) associated with TCGA and GTEx samples.

Package details

AuthorNuno Saraiva-Agostinho [aut, cre], Nuno Barbosa-Morais [aut, led, ths], André Falcão [ths], Lina Gallego Paez [ctb], Marie Bordone [ctb], Teresa Maia [ctb], Mariana Ferreira [ctb], Ana Carolina Leote [ctb], Bernardo Almeida [ctb]
Bioconductor views AlternativeSplicing BiomedicalInformatics DifferentialSplicing GUI MultipleComparison PrincipalComponent RNASeq Sequencing Survival Transcription Transcriptomics Visualization
MaintainerNuno Saraiva-Agostinho <>
LicenseMIT + file LICENSE
Package repositoryView on Bioconductor
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psichomics documentation built on May 31, 2017, 3:35 p.m.