ncdfFlow: ncdfFlow: A package that provides HDF5 based storage for flow cytometry data.

Provides HDF5 storage based methods and functions for manipulation of flow cytometry data.

Author
Mike Jiang,Greg Finak,N. Gopalakrishnan
Date of publication
None
Maintainer
Mike Jiang <wjiang2@fhcrc.org>
License
Artistic-2.0
Version
2.20.0

View on Bioconductor

Man pages

as.flowSet
convert from a 'ncdfFlowSet' to a 'flowSet'
clone.ncdfFlowSet
Clone a ncdfFlowSet
extractFlowFrame
extract a 'flowFrame' object from 'ncdfFlowSet'
flowSet-accessor
Accessors compatible with those for 'flowSet'
getFileName
get the cdf file name associated with ncdfFlowSet object
Indices
'getIndices' extracts the event indices of one or multiple...
lapply-methods
lapply method for ncdfFlowList
ncdfFlow
ncdfFlow: A package that provides CDF storage based flow...
ncdfFlowList-class
a class that stores multiple ncdfFlowSet objects
ncdfFlowSet-class
a class for storing flow cytometry raw data in HDF5 format
ncdfFlowSet-constructor
create ncdfFlowSet from flowSet
ncdfFlowSet-split
split a 'ncdfFlowSet' object.
ncdfFlowSet-Subset
subset a ncdfFlowSet by filter
ncfsApply-ncdfFlowSet-method
apply method for ncdfFlowSet (for internal use)
plot
flowViz plot methods.
rbind2-method
combine multiple ncdfFlowSet objects into one
read.ncdfFlowSet
create ncdfFlowSet from FCS files
replacement-method-for-ncdfFlowSet
write the flow data from a 'flowFrame' to 'ncdfFlowSet'...
save_ncfs
save/load a ncdfFlowSet object to/from disk.
subset-functions
subset the ncdfFlowSet/ncdfFlowList based on 'pData'
subset-methods
subsetting by sampleNames,channels(not for events) methods
unlink-ncdfFlowSet-method
delete the cdf file associated with the ncdfFlowSet object...

Files in this package

ncdfFlow/BinaryFiles
ncdfFlow/DESCRIPTION
ncdfFlow/NAMESPACE
ncdfFlow/R
ncdfFlow/R/AllClasses.R
ncdfFlow/R/AllGeneric.R
ncdfFlow/R/RcppExports.R
ncdfFlow/R/extractFlowFrame.R
ncdfFlow/R/ncdfFlowList-methods.R
ncdfFlow/R/ncdfFlowSet-Subset-methods.R
ncdfFlow/R/ncdfFlowSet-accessors.R
ncdfFlow/R/ncdfFlowSet-plot-methods.R
ncdfFlow/R/ncdfFlowSet-rbind-methods.R
ncdfFlow/R/ncdfFlowSet-split-methods.R
ncdfFlow/R/ncdfIO.R
ncdfFlow/R/subset-functions.R
ncdfFlow/R/subset-methods.R
ncdfFlow/README
ncdfFlow/build
ncdfFlow/build/vignette.rds
ncdfFlow/cleanup
ncdfFlow/configure
ncdfFlow/configure.ac
ncdfFlow/inst
ncdfFlow/inst/NEWS
ncdfFlow/inst/doc
ncdfFlow/inst/doc/ncdfFlow.R
ncdfFlow/inst/doc/ncdfFlow.Rnw
ncdfFlow/inst/doc/ncdfFlow.pdf
ncdfFlow/inst/include
ncdfFlow/inst/tests
ncdfFlow/man
ncdfFlow/man/Indices.Rd
ncdfFlow/man/as.flowSet.Rd
ncdfFlow/man/clone.ncdfFlowSet.Rd
ncdfFlow/man/extractFlowFrame.Rd
ncdfFlow/man/flowSet-accessor.Rd
ncdfFlow/man/getFileName.Rd
ncdfFlow/man/lapply-methods.Rd
ncdfFlow/man/ncdfFlow.Rd
ncdfFlow/man/ncdfFlowList-class.Rd
ncdfFlow/man/ncdfFlowSet-Subset.Rd
ncdfFlow/man/ncdfFlowSet-class.Rd
ncdfFlow/man/ncdfFlowSet-constructor.Rd
ncdfFlow/man/ncdfFlowSet-split.Rd
ncdfFlow/man/ncfsApply-ncdfFlowSet-method.Rd
ncdfFlow/man/plot.Rd
ncdfFlow/man/rbind2-method.Rd
ncdfFlow/man/read.ncdfFlowSet.Rd
ncdfFlow/man/replacement-method-for-ncdfFlowSet.Rd
ncdfFlow/man/save_ncfs.Rd
ncdfFlow/man/subset-functions.Rd
ncdfFlow/man/subset-methods.Rd
ncdfFlow/man/unlink-ncdfFlowSet-method.Rd
ncdfFlow/src
ncdfFlow/src/Makevars.in
ncdfFlow/src/Makevars.win
ncdfFlow/src/RcppExports.cpp
ncdfFlow/src/bitOps.cpp
ncdfFlow/src/hdfFlow.c
ncdfFlow/src/hdfFlow.h
ncdfFlow/src/includeWin
ncdfFlow/src/includeWin/i386
ncdfFlow/src/includeWin/i386/H5ACpkg.h
ncdfFlow/src/includeWin/i386/H5ACprivate.h
ncdfFlow/src/includeWin/i386/H5ACpublic.h
ncdfFlow/src/includeWin/i386/H5Apkg.h
ncdfFlow/src/includeWin/i386/H5Aprivate.h
ncdfFlow/src/includeWin/i386/H5Apublic.h
ncdfFlow/src/includeWin/i386/H5B2pkg.h
ncdfFlow/src/includeWin/i386/H5B2private.h
ncdfFlow/src/includeWin/i386/H5B2public.h
ncdfFlow/src/includeWin/i386/H5Bpkg.h
ncdfFlow/src/includeWin/i386/H5Bprivate.h
ncdfFlow/src/includeWin/i386/H5Bpublic.h
ncdfFlow/src/includeWin/i386/H5CSprivate.h
ncdfFlow/src/includeWin/i386/H5Cpkg.h
ncdfFlow/src/includeWin/i386/H5Cprivate.h
ncdfFlow/src/includeWin/i386/H5Cpublic.h
ncdfFlow/src/includeWin/i386/H5Dpkg.h
ncdfFlow/src/includeWin/i386/H5Dprivate.h
ncdfFlow/src/includeWin/i386/H5Dpublic.h
ncdfFlow/src/includeWin/i386/H5Edefin.h
ncdfFlow/src/includeWin/i386/H5Einit.h
ncdfFlow/src/includeWin/i386/H5Epkg.h
ncdfFlow/src/includeWin/i386/H5Eprivate.h
ncdfFlow/src/includeWin/i386/H5Epubgen.h
ncdfFlow/src/includeWin/i386/H5Epublic.h
ncdfFlow/src/includeWin/i386/H5Eterm.h
ncdfFlow/src/includeWin/i386/H5FDcore.h
ncdfFlow/src/includeWin/i386/H5FDdirect.h
ncdfFlow/src/includeWin/i386/H5FDfamily.h
ncdfFlow/src/includeWin/i386/H5FDlog.h
ncdfFlow/src/includeWin/i386/H5FDmpi.h
ncdfFlow/src/includeWin/i386/H5FDmpio.h
ncdfFlow/src/includeWin/i386/H5FDmpiposix.h
ncdfFlow/src/includeWin/i386/H5FDmulti.h
ncdfFlow/src/includeWin/i386/H5FDpkg.h
ncdfFlow/src/includeWin/i386/H5FDprivate.h
ncdfFlow/src/includeWin/i386/H5FDpublic.h
ncdfFlow/src/includeWin/i386/H5FDsec2.h
ncdfFlow/src/includeWin/i386/H5FDstdio.h
ncdfFlow/src/includeWin/i386/H5FDwindows.h
ncdfFlow/src/includeWin/i386/H5FLprivate.h
ncdfFlow/src/includeWin/i386/H5FOprivate.h
ncdfFlow/src/includeWin/i386/H5FSpkg.h
ncdfFlow/src/includeWin/i386/H5FSprivate.h
ncdfFlow/src/includeWin/i386/H5FSpublic.h
ncdfFlow/src/includeWin/i386/H5Fpkg.h
ncdfFlow/src/includeWin/i386/H5Fprivate.h
ncdfFlow/src/includeWin/i386/H5Fpublic.h
ncdfFlow/src/includeWin/i386/H5Gpkg.h
ncdfFlow/src/includeWin/i386/H5Gprivate.h
ncdfFlow/src/includeWin/i386/H5Gpublic.h
ncdfFlow/src/includeWin/i386/H5HFpkg.h
ncdfFlow/src/includeWin/i386/H5HFprivate.h
ncdfFlow/src/includeWin/i386/H5HFpublic.h
ncdfFlow/src/includeWin/i386/H5HGpkg.h
ncdfFlow/src/includeWin/i386/H5HGprivate.h
ncdfFlow/src/includeWin/i386/H5HGpublic.h
ncdfFlow/src/includeWin/i386/H5HLpkg.h
ncdfFlow/src/includeWin/i386/H5HLprivate.h
ncdfFlow/src/includeWin/i386/H5HLpublic.h
ncdfFlow/src/includeWin/i386/H5HPprivate.h
ncdfFlow/src/includeWin/i386/H5Ipkg.h
ncdfFlow/src/includeWin/i386/H5Iprivate.h
ncdfFlow/src/includeWin/i386/H5Ipublic.h
ncdfFlow/src/includeWin/i386/H5Lpkg.h
ncdfFlow/src/includeWin/i386/H5Lprivate.h
ncdfFlow/src/includeWin/i386/H5Lpublic.h
ncdfFlow/src/includeWin/i386/H5MFpkg.h
ncdfFlow/src/includeWin/i386/H5MFprivate.h
ncdfFlow/src/includeWin/i386/H5MMprivate.h
ncdfFlow/src/includeWin/i386/H5MMpublic.h
ncdfFlow/src/includeWin/i386/H5MPpkg.h
ncdfFlow/src/includeWin/i386/H5MPprivate.h
ncdfFlow/src/includeWin/i386/H5Opkg.h
ncdfFlow/src/includeWin/i386/H5Oprivate.h
ncdfFlow/src/includeWin/i386/H5Opublic.h
ncdfFlow/src/includeWin/i386/H5Oshared.h
ncdfFlow/src/includeWin/i386/H5Ppkg.h
ncdfFlow/src/includeWin/i386/H5Pprivate.h
ncdfFlow/src/includeWin/i386/H5Ppublic.h
ncdfFlow/src/includeWin/i386/H5RCprivate.h
ncdfFlow/src/includeWin/i386/H5RSprivate.h
ncdfFlow/src/includeWin/i386/H5Rpkg.h
ncdfFlow/src/includeWin/i386/H5Rprivate.h
ncdfFlow/src/includeWin/i386/H5Rpublic.h
ncdfFlow/src/includeWin/i386/H5SLprivate.h
ncdfFlow/src/includeWin/i386/H5SMpkg.h
ncdfFlow/src/includeWin/i386/H5SMprivate.h
ncdfFlow/src/includeWin/i386/H5STprivate.h
ncdfFlow/src/includeWin/i386/H5Spkg.h
ncdfFlow/src/includeWin/i386/H5Sprivate.h
ncdfFlow/src/includeWin/i386/H5Spublic.h
ncdfFlow/src/includeWin/i386/H5TSprivate.h
ncdfFlow/src/includeWin/i386/H5Tpkg.h
ncdfFlow/src/includeWin/i386/H5Tprivate.h
ncdfFlow/src/includeWin/i386/H5Tpublic.h
ncdfFlow/src/includeWin/i386/H5Vprivate.h
ncdfFlow/src/includeWin/i386/H5WBprivate.h
ncdfFlow/src/includeWin/i386/H5Zpkg.h
ncdfFlow/src/includeWin/i386/H5Zprivate.h
ncdfFlow/src/includeWin/i386/H5Zpublic.h
ncdfFlow/src/includeWin/i386/H5api_adpt.h
ncdfFlow/src/includeWin/i386/H5config.h
ncdfFlow/src/includeWin/i386/H5overflow.h
ncdfFlow/src/includeWin/i386/H5private.h
ncdfFlow/src/includeWin/i386/H5pubconf.h
ncdfFlow/src/includeWin/i386/H5public.h
ncdfFlow/src/includeWin/i386/H5version.h
ncdfFlow/src/includeWin/i386/H5win32defs.h
ncdfFlow/src/includeWin/i386/SZconfig.h
ncdfFlow/src/includeWin/i386/hdf5.h
ncdfFlow/src/includeWin/i386/rice.h
ncdfFlow/src/includeWin/i386/ricehdf.h
ncdfFlow/src/includeWin/i386/szip_adpt.h
ncdfFlow/src/includeWin/x64
ncdfFlow/src/includeWin/x64/H5ACpkg.h
ncdfFlow/src/includeWin/x64/H5ACprivate.h
ncdfFlow/src/includeWin/x64/H5ACpublic.h
ncdfFlow/src/includeWin/x64/H5Apkg.h
ncdfFlow/src/includeWin/x64/H5Aprivate.h
ncdfFlow/src/includeWin/x64/H5Apublic.h
ncdfFlow/src/includeWin/x64/H5B2pkg.h
ncdfFlow/src/includeWin/x64/H5B2private.h
ncdfFlow/src/includeWin/x64/H5B2public.h
ncdfFlow/src/includeWin/x64/H5Bpkg.h
ncdfFlow/src/includeWin/x64/H5Bprivate.h
ncdfFlow/src/includeWin/x64/H5Bpublic.h
ncdfFlow/src/includeWin/x64/H5CSprivate.h
ncdfFlow/src/includeWin/x64/H5Cpkg.h
ncdfFlow/src/includeWin/x64/H5Cprivate.h
ncdfFlow/src/includeWin/x64/H5Cpublic.h
ncdfFlow/src/includeWin/x64/H5Dpkg.h
ncdfFlow/src/includeWin/x64/H5Dprivate.h
ncdfFlow/src/includeWin/x64/H5Dpublic.h
ncdfFlow/src/includeWin/x64/H5Edefin.h
ncdfFlow/src/includeWin/x64/H5Einit.h
ncdfFlow/src/includeWin/x64/H5Epkg.h
ncdfFlow/src/includeWin/x64/H5Eprivate.h
ncdfFlow/src/includeWin/x64/H5Epubgen.h
ncdfFlow/src/includeWin/x64/H5Epublic.h
ncdfFlow/src/includeWin/x64/H5Eterm.h
ncdfFlow/src/includeWin/x64/H5FDcore.h
ncdfFlow/src/includeWin/x64/H5FDdirect.h
ncdfFlow/src/includeWin/x64/H5FDfamily.h
ncdfFlow/src/includeWin/x64/H5FDlog.h
ncdfFlow/src/includeWin/x64/H5FDmpi.h
ncdfFlow/src/includeWin/x64/H5FDmpio.h
ncdfFlow/src/includeWin/x64/H5FDmpiposix.h
ncdfFlow/src/includeWin/x64/H5FDmulti.h
ncdfFlow/src/includeWin/x64/H5FDpkg.h
ncdfFlow/src/includeWin/x64/H5FDprivate.h
ncdfFlow/src/includeWin/x64/H5FDpublic.h
ncdfFlow/src/includeWin/x64/H5FDsec2.h
ncdfFlow/src/includeWin/x64/H5FDstdio.h
ncdfFlow/src/includeWin/x64/H5FDwindows.h
ncdfFlow/src/includeWin/x64/H5FLprivate.h
ncdfFlow/src/includeWin/x64/H5FOprivate.h
ncdfFlow/src/includeWin/x64/H5FSpkg.h
ncdfFlow/src/includeWin/x64/H5FSprivate.h
ncdfFlow/src/includeWin/x64/H5FSpublic.h
ncdfFlow/src/includeWin/x64/H5Fpkg.h
ncdfFlow/src/includeWin/x64/H5Fprivate.h
ncdfFlow/src/includeWin/x64/H5Fpublic.h
ncdfFlow/src/includeWin/x64/H5Gpkg.h
ncdfFlow/src/includeWin/x64/H5Gprivate.h
ncdfFlow/src/includeWin/x64/H5Gpublic.h
ncdfFlow/src/includeWin/x64/H5HFpkg.h
ncdfFlow/src/includeWin/x64/H5HFprivate.h
ncdfFlow/src/includeWin/x64/H5HFpublic.h
ncdfFlow/src/includeWin/x64/H5HGpkg.h
ncdfFlow/src/includeWin/x64/H5HGprivate.h
ncdfFlow/src/includeWin/x64/H5HGpublic.h
ncdfFlow/src/includeWin/x64/H5HLpkg.h
ncdfFlow/src/includeWin/x64/H5HLprivate.h
ncdfFlow/src/includeWin/x64/H5HLpublic.h
ncdfFlow/src/includeWin/x64/H5HPprivate.h
ncdfFlow/src/includeWin/x64/H5Ipkg.h
ncdfFlow/src/includeWin/x64/H5Iprivate.h
ncdfFlow/src/includeWin/x64/H5Ipublic.h
ncdfFlow/src/includeWin/x64/H5Lpkg.h
ncdfFlow/src/includeWin/x64/H5Lprivate.h
ncdfFlow/src/includeWin/x64/H5Lpublic.h
ncdfFlow/src/includeWin/x64/H5MFpkg.h
ncdfFlow/src/includeWin/x64/H5MFprivate.h
ncdfFlow/src/includeWin/x64/H5MMprivate.h
ncdfFlow/src/includeWin/x64/H5MMpublic.h
ncdfFlow/src/includeWin/x64/H5MPpkg.h
ncdfFlow/src/includeWin/x64/H5MPprivate.h
ncdfFlow/src/includeWin/x64/H5Opkg.h
ncdfFlow/src/includeWin/x64/H5Oprivate.h
ncdfFlow/src/includeWin/x64/H5Opublic.h
ncdfFlow/src/includeWin/x64/H5Oshared.h
ncdfFlow/src/includeWin/x64/H5Ppkg.h
ncdfFlow/src/includeWin/x64/H5Pprivate.h
ncdfFlow/src/includeWin/x64/H5Ppublic.h
ncdfFlow/src/includeWin/x64/H5RCprivate.h
ncdfFlow/src/includeWin/x64/H5RSprivate.h
ncdfFlow/src/includeWin/x64/H5Rpkg.h
ncdfFlow/src/includeWin/x64/H5Rprivate.h
ncdfFlow/src/includeWin/x64/H5Rpublic.h
ncdfFlow/src/includeWin/x64/H5SLprivate.h
ncdfFlow/src/includeWin/x64/H5SMpkg.h
ncdfFlow/src/includeWin/x64/H5SMprivate.h
ncdfFlow/src/includeWin/x64/H5STprivate.h
ncdfFlow/src/includeWin/x64/H5Spkg.h
ncdfFlow/src/includeWin/x64/H5Sprivate.h
ncdfFlow/src/includeWin/x64/H5Spublic.h
ncdfFlow/src/includeWin/x64/H5TSprivate.h
ncdfFlow/src/includeWin/x64/H5Tpkg.h
ncdfFlow/src/includeWin/x64/H5Tprivate.h
ncdfFlow/src/includeWin/x64/H5Tpublic.h
ncdfFlow/src/includeWin/x64/H5Vprivate.h
ncdfFlow/src/includeWin/x64/H5WBprivate.h
ncdfFlow/src/includeWin/x64/H5Zpkg.h
ncdfFlow/src/includeWin/x64/H5Zprivate.h
ncdfFlow/src/includeWin/x64/H5Zpublic.h
ncdfFlow/src/includeWin/x64/H5api_adpt.h
ncdfFlow/src/includeWin/x64/H5config.h
ncdfFlow/src/includeWin/x64/H5overflow.h
ncdfFlow/src/includeWin/x64/H5private.h
ncdfFlow/src/includeWin/x64/H5pubconf.h
ncdfFlow/src/includeWin/x64/H5public.h
ncdfFlow/src/includeWin/x64/H5version.h
ncdfFlow/src/includeWin/x64/H5win32defs.h
ncdfFlow/src/includeWin/x64/SZconfig.h
ncdfFlow/src/includeWin/x64/hdf5.h
ncdfFlow/src/includeWin/x64/rice.h
ncdfFlow/src/includeWin/x64/ricehdf.h
ncdfFlow/src/includeWin/x64/szip_adpt.h
ncdfFlow/src/includeWin/x64/szlib.h
ncdfFlow/src/init.c
ncdfFlow/src/libwin
ncdfFlow/src/libwin/i386
ncdfFlow/src/libwin/i386/libhdf5ForBioC-7.dll
ncdfFlow/src/libwin/i386/libsz-2.dll
ncdfFlow/src/libwin/x64
ncdfFlow/src/libwin/x64/libhdf5ForBioC-7.dll
ncdfFlow/src/libwin/x64/libsz-2.dll
ncdfFlow/src/readFrame.cpp
ncdfFlow/tests
ncdfFlow/tests/testthat
ncdfFlow/tests/testthat.R
ncdfFlow/tests/testthat/helper_data.R
ncdfFlow/tests/testthat/helper_equal_function.R
ncdfFlow/tests/testthat/test_IO.R
ncdfFlow/tests/testthat/test_compensation.R
ncdfFlow/tests/testthat/test_misc.R
ncdfFlow/tests/testthat/test_ncdfFlowList.R
ncdfFlow/tests/testthat/test_ncdfFlowSet_accessor.R
ncdfFlow/vignettes
ncdfFlow/vignettes/ncdfFlow.Rnw