ncdfFlow: ncdfFlow: A package that provides HDF5 based storage for flow cytometry data.

Provides HDF5 storage based methods and functions for manipulation of flow cytometry data.

AuthorMike Jiang,Greg Finak,N. Gopalakrishnan
Date of publicationNone
MaintainerMike Jiang <wjiang2@fhcrc.org>
LicenseArtistic-2.0
Version2.20.1

View on Bioconductor

Functions

as.flowSet Man page
clone.ncdfFlowSet Man page
colnames<- Man page
colnames<-,ncdfFlowList-method Man page
colnames,ncdfFlowList-method Man page
colnames<-,ncdfFlowSet,ANY-method Man page
colnames<-,ncdfFlowSet-method Man page
compensate,flowSet,data.frame-method Man page
compensate,ncdfFlowSet,ANY-method Man page
compensate,ncdfFlowSet,list-method Man page
densityplot,formula,ncdfFlowList-method Man page
densityplot,formula,ncdfFlowSet-method Man page
filter,ncdfFlowList,filter-method Man page
getFileName Man page
getIndices Man page
getIndices,ncdfFlowSet,character-method Man page
histogram,formula,ncdfFlowList-method Man page
histogram,formula,ncdfFlowSet-method Man page
initIndices Man page
initIndices,ncdfFlowSet-method Man page
lapply,ncdfFlowList-method Man page
length,ncdfFlowList-method Man page
load_ncfs Man page
markernames<-,ncdfFlowList-method Man page
markernames,ncdfFlowList-method Man page
ncdfFlow Man page
ncdfFlowList Man page
[,ncdfFlowList,ANY-method Man page
[[,ncdfFlowList,character-method Man page
[[,ncdfFlowList,character,missing-method Man page
ncdfFlowList-class Man page
[[,ncdfFlowList,logical-method Man page
[[,ncdfFlowList,numeric-method Man page
ncdfFlow-package Man page
ncdfFlowSet Man page
[[<-,ncdfFlowSet,ANY,ANY,flowFrame-method Man page
[,ncdfFlowSet,ANY-method Man page
[[,ncdfFlowSet,ANY-method Man page
ncdfFlowSet-class Man page
[[<-,ncdfFlowSet,flowFrame-method Man page
ncdfFlowSet,flowSet-method Man page
ncfsApply Man page
ncfsApply,ncdfFlowSet-method Man page
pData<-,ncdfFlowList,data.frame-method Man page
pData,ncdfFlowList-method Man page
phenoData<-,ncdfFlowList,AnnotatedDataFrame-method Man page
phenoData,ncdfFlowList-method Man page
rbind2,ncdfFlowList,ANY-method Man page
read.ncdfFlowset Man page
read.ncdfFlowSet Man page
replacement method for ncdfFlowSet Man page
sampleNames<- Man page
sampleNames,ncdfFlowList-method Man page
sampleNames<-,ncdfFlowSet,ANY-method Man page
save_ncfs Man page
show Man page
show,ncdfFlowList-method Man page
show,ncdfFlowSet-method Man page
split,ncdfFlowList,character-method Man page
split,ncdfFlowList,factor-method Man page
split,ncdfFlowSet,character-method Man page
split,ncdfFlowSet,factor-method Man page
split,ncdfFlowSet,filter-method Man page
split,ncdfFlowSet,filterResultList-method Man page
split,ncdfFlowSet,list-method Man page
subset.ncdfFlowList Man page
Subset,ncdfFlowList,filter-method Man page
Subset,ncdfFlowList,filterResultList-method Man page
subset.ncdfFlowSet Man page
Subset,ncdfFlowSet,filter-method Man page
Subset,ncdfFlowSet,filterResultList-method Man page
Subset,ncdfFlowSet,list-method Man page
transform,ncdfFlowSet-method Man page
unlink,ncdfFlowSet-method Man page
updateIndices Man page
updateIndices,ncdfFlowSet,character,logical-method Man page
xyplot,formula,ncdfFlowList-method Man page
xyplot,formula,ncdfFlowSet-method Man page

Files

ncdfFlow/BinaryFiles
ncdfFlow/DESCRIPTION
ncdfFlow/NAMESPACE
ncdfFlow/R
ncdfFlow/R/AllClasses.R ncdfFlow/R/AllGeneric.R ncdfFlow/R/RcppExports.R ncdfFlow/R/extractFlowFrame.R ncdfFlow/R/ncdfFlowList-methods.R ncdfFlow/R/ncdfFlowSet-Subset-methods.R ncdfFlow/R/ncdfFlowSet-accessors.R ncdfFlow/R/ncdfFlowSet-plot-methods.R ncdfFlow/R/ncdfFlowSet-rbind-methods.R ncdfFlow/R/ncdfFlowSet-split-methods.R ncdfFlow/R/ncdfIO.R ncdfFlow/R/subset-functions.R ncdfFlow/R/subset-methods.R
ncdfFlow/README
ncdfFlow/build
ncdfFlow/build/vignette.rds
ncdfFlow/cleanup
ncdfFlow/configure
ncdfFlow/configure.ac
ncdfFlow/inst
ncdfFlow/inst/NEWS
ncdfFlow/inst/doc
ncdfFlow/inst/doc/ncdfFlow.R
ncdfFlow/inst/doc/ncdfFlow.Rnw
ncdfFlow/inst/doc/ncdfFlow.pdf
ncdfFlow/inst/include
ncdfFlow/inst/tests
ncdfFlow/man
ncdfFlow/man/Indices.Rd ncdfFlow/man/as.flowSet.Rd ncdfFlow/man/clone.ncdfFlowSet.Rd ncdfFlow/man/extractFlowFrame.Rd ncdfFlow/man/flowSet-accessor.Rd ncdfFlow/man/getFileName.Rd ncdfFlow/man/lapply-methods.Rd ncdfFlow/man/ncdfFlow.Rd ncdfFlow/man/ncdfFlowList-class.Rd ncdfFlow/man/ncdfFlowSet-Subset.Rd ncdfFlow/man/ncdfFlowSet-class.Rd ncdfFlow/man/ncdfFlowSet-constructor.Rd ncdfFlow/man/ncdfFlowSet-split.Rd ncdfFlow/man/ncfsApply-ncdfFlowSet-method.Rd ncdfFlow/man/plot.Rd ncdfFlow/man/rbind2-method.Rd ncdfFlow/man/read.ncdfFlowSet.Rd ncdfFlow/man/replacement-method-for-ncdfFlowSet.Rd ncdfFlow/man/save_ncfs.Rd ncdfFlow/man/subset-functions.Rd ncdfFlow/man/subset-methods.Rd ncdfFlow/man/unlink-ncdfFlowSet-method.Rd
ncdfFlow/src
ncdfFlow/src/Makevars.in
ncdfFlow/src/Makevars.win
ncdfFlow/src/RcppExports.cpp
ncdfFlow/src/bitOps.cpp
ncdfFlow/src/hdfFlow.c
ncdfFlow/src/hdfFlow.h
ncdfFlow/src/includeWin
ncdfFlow/src/includeWin/i386
ncdfFlow/src/includeWin/i386/H5ACpkg.h
ncdfFlow/src/includeWin/i386/H5ACprivate.h
ncdfFlow/src/includeWin/i386/H5ACpublic.h
ncdfFlow/src/includeWin/i386/H5Apkg.h
ncdfFlow/src/includeWin/i386/H5Aprivate.h
ncdfFlow/src/includeWin/i386/H5Apublic.h
ncdfFlow/src/includeWin/i386/H5B2pkg.h
ncdfFlow/src/includeWin/i386/H5B2private.h
ncdfFlow/src/includeWin/i386/H5B2public.h
ncdfFlow/src/includeWin/i386/H5Bpkg.h
ncdfFlow/src/includeWin/i386/H5Bprivate.h
ncdfFlow/src/includeWin/i386/H5Bpublic.h
ncdfFlow/src/includeWin/i386/H5CSprivate.h
ncdfFlow/src/includeWin/i386/H5Cpkg.h
ncdfFlow/src/includeWin/i386/H5Cprivate.h
ncdfFlow/src/includeWin/i386/H5Cpublic.h
ncdfFlow/src/includeWin/i386/H5Dpkg.h
ncdfFlow/src/includeWin/i386/H5Dprivate.h
ncdfFlow/src/includeWin/i386/H5Dpublic.h
ncdfFlow/src/includeWin/i386/H5Edefin.h
ncdfFlow/src/includeWin/i386/H5Einit.h
ncdfFlow/src/includeWin/i386/H5Epkg.h
ncdfFlow/src/includeWin/i386/H5Eprivate.h
ncdfFlow/src/includeWin/i386/H5Epubgen.h
ncdfFlow/src/includeWin/i386/H5Epublic.h
ncdfFlow/src/includeWin/i386/H5Eterm.h
ncdfFlow/src/includeWin/i386/H5FDcore.h
ncdfFlow/src/includeWin/i386/H5FDdirect.h
ncdfFlow/src/includeWin/i386/H5FDfamily.h
ncdfFlow/src/includeWin/i386/H5FDlog.h
ncdfFlow/src/includeWin/i386/H5FDmpi.h
ncdfFlow/src/includeWin/i386/H5FDmpio.h
ncdfFlow/src/includeWin/i386/H5FDmpiposix.h
ncdfFlow/src/includeWin/i386/H5FDmulti.h
ncdfFlow/src/includeWin/i386/H5FDpkg.h
ncdfFlow/src/includeWin/i386/H5FDprivate.h
ncdfFlow/src/includeWin/i386/H5FDpublic.h
ncdfFlow/src/includeWin/i386/H5FDsec2.h
ncdfFlow/src/includeWin/i386/H5FDstdio.h
ncdfFlow/src/includeWin/i386/H5FDwindows.h
ncdfFlow/src/includeWin/i386/H5FLprivate.h
ncdfFlow/src/includeWin/i386/H5FOprivate.h
ncdfFlow/src/includeWin/i386/H5FSpkg.h
ncdfFlow/src/includeWin/i386/H5FSprivate.h
ncdfFlow/src/includeWin/i386/H5FSpublic.h
ncdfFlow/src/includeWin/i386/H5Fpkg.h
ncdfFlow/src/includeWin/i386/H5Fprivate.h
ncdfFlow/src/includeWin/i386/H5Fpublic.h
ncdfFlow/src/includeWin/i386/H5Gpkg.h
ncdfFlow/src/includeWin/i386/H5Gprivate.h
ncdfFlow/src/includeWin/i386/H5Gpublic.h
ncdfFlow/src/includeWin/i386/H5HFpkg.h
ncdfFlow/src/includeWin/i386/H5HFprivate.h
ncdfFlow/src/includeWin/i386/H5HFpublic.h
ncdfFlow/src/includeWin/i386/H5HGpkg.h
ncdfFlow/src/includeWin/i386/H5HGprivate.h
ncdfFlow/src/includeWin/i386/H5HGpublic.h
ncdfFlow/src/includeWin/i386/H5HLpkg.h
ncdfFlow/src/includeWin/i386/H5HLprivate.h
ncdfFlow/src/includeWin/i386/H5HLpublic.h
ncdfFlow/src/includeWin/i386/H5HPprivate.h
ncdfFlow/src/includeWin/i386/H5Ipkg.h
ncdfFlow/src/includeWin/i386/H5Iprivate.h
ncdfFlow/src/includeWin/i386/H5Ipublic.h
ncdfFlow/src/includeWin/i386/H5Lpkg.h
ncdfFlow/src/includeWin/i386/H5Lprivate.h
ncdfFlow/src/includeWin/i386/H5Lpublic.h
ncdfFlow/src/includeWin/i386/H5MFpkg.h
ncdfFlow/src/includeWin/i386/H5MFprivate.h
ncdfFlow/src/includeWin/i386/H5MMprivate.h
ncdfFlow/src/includeWin/i386/H5MMpublic.h
ncdfFlow/src/includeWin/i386/H5MPpkg.h
ncdfFlow/src/includeWin/i386/H5MPprivate.h
ncdfFlow/src/includeWin/i386/H5Opkg.h
ncdfFlow/src/includeWin/i386/H5Oprivate.h
ncdfFlow/src/includeWin/i386/H5Opublic.h
ncdfFlow/src/includeWin/i386/H5Oshared.h
ncdfFlow/src/includeWin/i386/H5Ppkg.h
ncdfFlow/src/includeWin/i386/H5Pprivate.h
ncdfFlow/src/includeWin/i386/H5Ppublic.h
ncdfFlow/src/includeWin/i386/H5RCprivate.h
ncdfFlow/src/includeWin/i386/H5RSprivate.h
ncdfFlow/src/includeWin/i386/H5Rpkg.h
ncdfFlow/src/includeWin/i386/H5Rprivate.h
ncdfFlow/src/includeWin/i386/H5Rpublic.h
ncdfFlow/src/includeWin/i386/H5SLprivate.h
ncdfFlow/src/includeWin/i386/H5SMpkg.h
ncdfFlow/src/includeWin/i386/H5SMprivate.h
ncdfFlow/src/includeWin/i386/H5STprivate.h
ncdfFlow/src/includeWin/i386/H5Spkg.h
ncdfFlow/src/includeWin/i386/H5Sprivate.h
ncdfFlow/src/includeWin/i386/H5Spublic.h
ncdfFlow/src/includeWin/i386/H5TSprivate.h
ncdfFlow/src/includeWin/i386/H5Tpkg.h
ncdfFlow/src/includeWin/i386/H5Tprivate.h
ncdfFlow/src/includeWin/i386/H5Tpublic.h
ncdfFlow/src/includeWin/i386/H5Vprivate.h
ncdfFlow/src/includeWin/i386/H5WBprivate.h
ncdfFlow/src/includeWin/i386/H5Zpkg.h
ncdfFlow/src/includeWin/i386/H5Zprivate.h
ncdfFlow/src/includeWin/i386/H5Zpublic.h
ncdfFlow/src/includeWin/i386/H5api_adpt.h
ncdfFlow/src/includeWin/i386/H5config.h
ncdfFlow/src/includeWin/i386/H5overflow.h
ncdfFlow/src/includeWin/i386/H5private.h
ncdfFlow/src/includeWin/i386/H5pubconf.h
ncdfFlow/src/includeWin/i386/H5public.h
ncdfFlow/src/includeWin/i386/H5version.h
ncdfFlow/src/includeWin/i386/H5win32defs.h
ncdfFlow/src/includeWin/i386/SZconfig.h
ncdfFlow/src/includeWin/i386/hdf5.h
ncdfFlow/src/includeWin/i386/rice.h
ncdfFlow/src/includeWin/i386/ricehdf.h
ncdfFlow/src/includeWin/i386/szip_adpt.h
ncdfFlow/src/includeWin/x64
ncdfFlow/src/includeWin/x64/H5ACpkg.h
ncdfFlow/src/includeWin/x64/H5ACprivate.h
ncdfFlow/src/includeWin/x64/H5ACpublic.h
ncdfFlow/src/includeWin/x64/H5Apkg.h
ncdfFlow/src/includeWin/x64/H5Aprivate.h
ncdfFlow/src/includeWin/x64/H5Apublic.h
ncdfFlow/src/includeWin/x64/H5B2pkg.h
ncdfFlow/src/includeWin/x64/H5B2private.h
ncdfFlow/src/includeWin/x64/H5B2public.h
ncdfFlow/src/includeWin/x64/H5Bpkg.h
ncdfFlow/src/includeWin/x64/H5Bprivate.h
ncdfFlow/src/includeWin/x64/H5Bpublic.h
ncdfFlow/src/includeWin/x64/H5CSprivate.h
ncdfFlow/src/includeWin/x64/H5Cpkg.h
ncdfFlow/src/includeWin/x64/H5Cprivate.h
ncdfFlow/src/includeWin/x64/H5Cpublic.h
ncdfFlow/src/includeWin/x64/H5Dpkg.h
ncdfFlow/src/includeWin/x64/H5Dprivate.h
ncdfFlow/src/includeWin/x64/H5Dpublic.h
ncdfFlow/src/includeWin/x64/H5Edefin.h
ncdfFlow/src/includeWin/x64/H5Einit.h
ncdfFlow/src/includeWin/x64/H5Epkg.h
ncdfFlow/src/includeWin/x64/H5Eprivate.h
ncdfFlow/src/includeWin/x64/H5Epubgen.h
ncdfFlow/src/includeWin/x64/H5Epublic.h
ncdfFlow/src/includeWin/x64/H5Eterm.h
ncdfFlow/src/includeWin/x64/H5FDcore.h
ncdfFlow/src/includeWin/x64/H5FDdirect.h
ncdfFlow/src/includeWin/x64/H5FDfamily.h
ncdfFlow/src/includeWin/x64/H5FDlog.h
ncdfFlow/src/includeWin/x64/H5FDmpi.h
ncdfFlow/src/includeWin/x64/H5FDmpio.h
ncdfFlow/src/includeWin/x64/H5FDmpiposix.h
ncdfFlow/src/includeWin/x64/H5FDmulti.h
ncdfFlow/src/includeWin/x64/H5FDpkg.h
ncdfFlow/src/includeWin/x64/H5FDprivate.h
ncdfFlow/src/includeWin/x64/H5FDpublic.h
ncdfFlow/src/includeWin/x64/H5FDsec2.h
ncdfFlow/src/includeWin/x64/H5FDstdio.h
ncdfFlow/src/includeWin/x64/H5FDwindows.h
ncdfFlow/src/includeWin/x64/H5FLprivate.h
ncdfFlow/src/includeWin/x64/H5FOprivate.h
ncdfFlow/src/includeWin/x64/H5FSpkg.h
ncdfFlow/src/includeWin/x64/H5FSprivate.h
ncdfFlow/src/includeWin/x64/H5FSpublic.h
ncdfFlow/src/includeWin/x64/H5Fpkg.h
ncdfFlow/src/includeWin/x64/H5Fprivate.h
ncdfFlow/src/includeWin/x64/H5Fpublic.h
ncdfFlow/src/includeWin/x64/H5Gpkg.h
ncdfFlow/src/includeWin/x64/H5Gprivate.h
ncdfFlow/src/includeWin/x64/H5Gpublic.h
ncdfFlow/src/includeWin/x64/H5HFpkg.h
ncdfFlow/src/includeWin/x64/H5HFprivate.h
ncdfFlow/src/includeWin/x64/H5HFpublic.h
ncdfFlow/src/includeWin/x64/H5HGpkg.h
ncdfFlow/src/includeWin/x64/H5HGprivate.h
ncdfFlow/src/includeWin/x64/H5HGpublic.h
ncdfFlow/src/includeWin/x64/H5HLpkg.h
ncdfFlow/src/includeWin/x64/H5HLprivate.h
ncdfFlow/src/includeWin/x64/H5HLpublic.h
ncdfFlow/src/includeWin/x64/H5HPprivate.h
ncdfFlow/src/includeWin/x64/H5Ipkg.h
ncdfFlow/src/includeWin/x64/H5Iprivate.h
ncdfFlow/src/includeWin/x64/H5Ipublic.h
ncdfFlow/src/includeWin/x64/H5Lpkg.h
ncdfFlow/src/includeWin/x64/H5Lprivate.h
ncdfFlow/src/includeWin/x64/H5Lpublic.h
ncdfFlow/src/includeWin/x64/H5MFpkg.h
ncdfFlow/src/includeWin/x64/H5MFprivate.h
ncdfFlow/src/includeWin/x64/H5MMprivate.h
ncdfFlow/src/includeWin/x64/H5MMpublic.h
ncdfFlow/src/includeWin/x64/H5MPpkg.h
ncdfFlow/src/includeWin/x64/H5MPprivate.h
ncdfFlow/src/includeWin/x64/H5Opkg.h
ncdfFlow/src/includeWin/x64/H5Oprivate.h
ncdfFlow/src/includeWin/x64/H5Opublic.h
ncdfFlow/src/includeWin/x64/H5Oshared.h
ncdfFlow/src/includeWin/x64/H5Ppkg.h
ncdfFlow/src/includeWin/x64/H5Pprivate.h
ncdfFlow/src/includeWin/x64/H5Ppublic.h
ncdfFlow/src/includeWin/x64/H5RCprivate.h
ncdfFlow/src/includeWin/x64/H5RSprivate.h
ncdfFlow/src/includeWin/x64/H5Rpkg.h
ncdfFlow/src/includeWin/x64/H5Rprivate.h
ncdfFlow/src/includeWin/x64/H5Rpublic.h
ncdfFlow/src/includeWin/x64/H5SLprivate.h
ncdfFlow/src/includeWin/x64/H5SMpkg.h
ncdfFlow/src/includeWin/x64/H5SMprivate.h
ncdfFlow/src/includeWin/x64/H5STprivate.h
ncdfFlow/src/includeWin/x64/H5Spkg.h
ncdfFlow/src/includeWin/x64/H5Sprivate.h
ncdfFlow/src/includeWin/x64/H5Spublic.h
ncdfFlow/src/includeWin/x64/H5TSprivate.h
ncdfFlow/src/includeWin/x64/H5Tpkg.h
ncdfFlow/src/includeWin/x64/H5Tprivate.h
ncdfFlow/src/includeWin/x64/H5Tpublic.h
ncdfFlow/src/includeWin/x64/H5Vprivate.h
ncdfFlow/src/includeWin/x64/H5WBprivate.h
ncdfFlow/src/includeWin/x64/H5Zpkg.h
ncdfFlow/src/includeWin/x64/H5Zprivate.h
ncdfFlow/src/includeWin/x64/H5Zpublic.h
ncdfFlow/src/includeWin/x64/H5api_adpt.h
ncdfFlow/src/includeWin/x64/H5config.h
ncdfFlow/src/includeWin/x64/H5overflow.h
ncdfFlow/src/includeWin/x64/H5private.h
ncdfFlow/src/includeWin/x64/H5pubconf.h
ncdfFlow/src/includeWin/x64/H5public.h
ncdfFlow/src/includeWin/x64/H5version.h
ncdfFlow/src/includeWin/x64/H5win32defs.h
ncdfFlow/src/includeWin/x64/SZconfig.h
ncdfFlow/src/includeWin/x64/hdf5.h
ncdfFlow/src/includeWin/x64/rice.h
ncdfFlow/src/includeWin/x64/ricehdf.h
ncdfFlow/src/includeWin/x64/szip_adpt.h
ncdfFlow/src/includeWin/x64/szlib.h
ncdfFlow/src/init.c
ncdfFlow/src/libwin
ncdfFlow/src/libwin/i386
ncdfFlow/src/libwin/i386/libhdf5ForBioC-7.dll
ncdfFlow/src/libwin/i386/libsz-2.dll
ncdfFlow/src/libwin/x64
ncdfFlow/src/libwin/x64/libhdf5ForBioC-7.dll
ncdfFlow/src/libwin/x64/libsz-2.dll
ncdfFlow/src/readFrame.cpp
ncdfFlow/tests
ncdfFlow/tests/testthat
ncdfFlow/tests/testthat.R
ncdfFlow/tests/testthat/helper_data.R
ncdfFlow/tests/testthat/helper_equal_function.R
ncdfFlow/tests/testthat/test_IO.R
ncdfFlow/tests/testthat/test_compensation.R
ncdfFlow/tests/testthat/test_misc.R
ncdfFlow/tests/testthat/test_ncdfFlowList.R
ncdfFlow/tests/testthat/test_ncdfFlowSet_accessor.R
ncdfFlow/vignettes
ncdfFlow/vignettes/ncdfFlow.Rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.