ncdfFlow: ncdfFlow: A package that provides HDF5 based storage for flow cytometry data.
Version 2.22.0

Provides HDF5 storage based methods and functions for manipulation of flow cytometry data.

AuthorMike Jiang,Greg Finak,N. Gopalakrishnan
Bioconductor views FlowCytometry
Date of publicationNone
MaintainerMike Jiang <wjiang2@fhcrc.org>
LicenseArtistic-2.0
Version2.22.0
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("ncdfFlow")

Getting started

README.md

Popular man pages

as.flowSet: convert from a 'ncdfFlowSet' to a 'flowSet'
clone.ncdfFlowSet: Clone a ncdfFlowSet
extractFlowFrame: extract a 'flowFrame' object from 'ncdfFlowSet'
ncdfFlowSet-constructor: create ncdfFlowSet from flowSet
ncdfFlowSet-split: split a 'ncdfFlowSet' object.
save_ncfs: save/load a ncdfFlowSet object to/from disk.
subset-functions: subset the ncdfFlowSet/ncdfFlowList based on 'pData'
See all...

All man pages Function index File listing

Man pages

as.flowSet: convert from a 'ncdfFlowSet' to a 'flowSet'
clone.ncdfFlowSet: Clone a ncdfFlowSet
extractFlowFrame: extract a 'flowFrame' object from 'ncdfFlowSet'
flowSet-accessor: Accessors compatible with those for 'flowSet'
getFileName: get the cdf file name associated with ncdfFlowSet object
Indices: 'getIndices' extracts the event indices of one or multiple...
lapply-methods: lapply method for ncdfFlowList
ncdfFlow: ncdfFlow: A package that provides CDF storage based flow...
ncdfFlowList-class: a class that stores multiple ncdfFlowSet objects
ncdfFlowSet-class: a class for storing flow cytometry raw data in HDF5 format
ncdfFlowSet-constructor: create ncdfFlowSet from flowSet
ncdfFlowSet-split: split a 'ncdfFlowSet' object.
ncdfFlowSet-Subset: subset a ncdfFlowSet by filter
ncfsApply-ncdfFlowSet-method: apply method for ncdfFlowSet (for internal use)
plot: flowViz plot methods.
rbind2-method: combine multiple ncdfFlowSet objects into one
read.ncdfFlowSet: create ncdfFlowSet from FCS files
replacement-method-for-ncdfFlowSet: write the flow data from a 'flowFrame' to 'ncdfFlowSet'...
save_ncfs: save/load a ncdfFlowSet object to/from disk.
subset-functions: subset the ncdfFlowSet/ncdfFlowList based on 'pData'
subset-methods: subsetting by sampleNames,channels(not for events) methods
unlink-ncdfFlowSet-method: delete the cdf file associated with the ncdfFlowSet object...

Functions

Files

BinaryFiles
DESCRIPTION
NAMESPACE
R
R/AllClasses.R
R/AllGeneric.R
R/RcppExports.R
R/extractFlowFrame.R
R/ncdfFlowList-methods.R
R/ncdfFlowSet-Subset-methods.R
R/ncdfFlowSet-accessors.R
R/ncdfFlowSet-plot-methods.R
R/ncdfFlowSet-rbind-methods.R
R/ncdfFlowSet-split-methods.R
R/ncdfIO.R
R/subset-functions.R
R/subset-methods.R
README
README.Rmd
README.md
build
build/vignette.rds
cleanup
configure
configure.ac
inst
inst/NEWS
inst/doc
inst/doc/ncdfFlow.R
inst/doc/ncdfFlow.Rnw
inst/doc/ncdfFlow.pdf
inst/include
inst/tests
man
man/Indices.Rd
man/as.flowSet.Rd
man/clone.ncdfFlowSet.Rd
man/extractFlowFrame.Rd
man/flowSet-accessor.Rd
man/getFileName.Rd
man/lapply-methods.Rd
man/ncdfFlow.Rd
man/ncdfFlowList-class.Rd
man/ncdfFlowSet-Subset.Rd
man/ncdfFlowSet-class.Rd
man/ncdfFlowSet-constructor.Rd
man/ncdfFlowSet-split.Rd
man/ncfsApply-ncdfFlowSet-method.Rd
man/plot.Rd
man/rbind2-method.Rd
man/read.ncdfFlowSet.Rd
man/replacement-method-for-ncdfFlowSet.Rd
man/save_ncfs.Rd
man/subset-functions.Rd
man/subset-methods.Rd
man/unlink-ncdfFlowSet-method.Rd
src
src/Makevars.in
src/Makevars.win
src/RcppExports.cpp
src/bitOps.cpp
src/hdfFlow.c
src/hdfFlow.h
src/includeWin
src/includeWin/i386
src/includeWin/i386/H5ACpkg.h
src/includeWin/i386/H5ACprivate.h
src/includeWin/i386/H5ACpublic.h
src/includeWin/i386/H5Apkg.h
src/includeWin/i386/H5Aprivate.h
src/includeWin/i386/H5Apublic.h
src/includeWin/i386/H5B2pkg.h
src/includeWin/i386/H5B2private.h
src/includeWin/i386/H5B2public.h
src/includeWin/i386/H5Bpkg.h
src/includeWin/i386/H5Bprivate.h
src/includeWin/i386/H5Bpublic.h
src/includeWin/i386/H5CSprivate.h
src/includeWin/i386/H5Cpkg.h
src/includeWin/i386/H5Cprivate.h
src/includeWin/i386/H5Cpublic.h
src/includeWin/i386/H5Dpkg.h
src/includeWin/i386/H5Dprivate.h
src/includeWin/i386/H5Dpublic.h
src/includeWin/i386/H5Edefin.h
src/includeWin/i386/H5Einit.h
src/includeWin/i386/H5Epkg.h
src/includeWin/i386/H5Eprivate.h
src/includeWin/i386/H5Epubgen.h
src/includeWin/i386/H5Epublic.h
src/includeWin/i386/H5Eterm.h
src/includeWin/i386/H5FDcore.h
src/includeWin/i386/H5FDdirect.h
src/includeWin/i386/H5FDfamily.h
src/includeWin/i386/H5FDlog.h
src/includeWin/i386/H5FDmpi.h
src/includeWin/i386/H5FDmpio.h
src/includeWin/i386/H5FDmpiposix.h
src/includeWin/i386/H5FDmulti.h
src/includeWin/i386/H5FDpkg.h
src/includeWin/i386/H5FDprivate.h
src/includeWin/i386/H5FDpublic.h
src/includeWin/i386/H5FDsec2.h
src/includeWin/i386/H5FDstdio.h
src/includeWin/i386/H5FDwindows.h
src/includeWin/i386/H5FLprivate.h
src/includeWin/i386/H5FOprivate.h
src/includeWin/i386/H5FSpkg.h
src/includeWin/i386/H5FSprivate.h
src/includeWin/i386/H5FSpublic.h
src/includeWin/i386/H5Fpkg.h
src/includeWin/i386/H5Fprivate.h
src/includeWin/i386/H5Fpublic.h
src/includeWin/i386/H5Gpkg.h
src/includeWin/i386/H5Gprivate.h
src/includeWin/i386/H5Gpublic.h
src/includeWin/i386/H5HFpkg.h
src/includeWin/i386/H5HFprivate.h
src/includeWin/i386/H5HFpublic.h
src/includeWin/i386/H5HGpkg.h
src/includeWin/i386/H5HGprivate.h
src/includeWin/i386/H5HGpublic.h
src/includeWin/i386/H5HLpkg.h
src/includeWin/i386/H5HLprivate.h
src/includeWin/i386/H5HLpublic.h
src/includeWin/i386/H5HPprivate.h
src/includeWin/i386/H5Ipkg.h
src/includeWin/i386/H5Iprivate.h
src/includeWin/i386/H5Ipublic.h
src/includeWin/i386/H5Lpkg.h
src/includeWin/i386/H5Lprivate.h
src/includeWin/i386/H5Lpublic.h
src/includeWin/i386/H5MFpkg.h
src/includeWin/i386/H5MFprivate.h
src/includeWin/i386/H5MMprivate.h
src/includeWin/i386/H5MMpublic.h
src/includeWin/i386/H5MPpkg.h
src/includeWin/i386/H5MPprivate.h
src/includeWin/i386/H5Opkg.h
src/includeWin/i386/H5Oprivate.h
src/includeWin/i386/H5Opublic.h
src/includeWin/i386/H5Oshared.h
src/includeWin/i386/H5Ppkg.h
src/includeWin/i386/H5Pprivate.h
src/includeWin/i386/H5Ppublic.h
src/includeWin/i386/H5RCprivate.h
src/includeWin/i386/H5RSprivate.h
src/includeWin/i386/H5Rpkg.h
src/includeWin/i386/H5Rprivate.h
src/includeWin/i386/H5Rpublic.h
src/includeWin/i386/H5SLprivate.h
src/includeWin/i386/H5SMpkg.h
src/includeWin/i386/H5SMprivate.h
src/includeWin/i386/H5STprivate.h
src/includeWin/i386/H5Spkg.h
src/includeWin/i386/H5Sprivate.h
src/includeWin/i386/H5Spublic.h
src/includeWin/i386/H5TSprivate.h
src/includeWin/i386/H5Tpkg.h
src/includeWin/i386/H5Tprivate.h
src/includeWin/i386/H5Tpublic.h
src/includeWin/i386/H5Vprivate.h
src/includeWin/i386/H5WBprivate.h
src/includeWin/i386/H5Zpkg.h
src/includeWin/i386/H5Zprivate.h
src/includeWin/i386/H5Zpublic.h
src/includeWin/i386/H5api_adpt.h
src/includeWin/i386/H5config.h
src/includeWin/i386/H5overflow.h
src/includeWin/i386/H5private.h
src/includeWin/i386/H5pubconf.h
src/includeWin/i386/H5public.h
src/includeWin/i386/H5version.h
src/includeWin/i386/H5win32defs.h
src/includeWin/i386/SZconfig.h
src/includeWin/i386/hdf5.h
src/includeWin/i386/rice.h
src/includeWin/i386/ricehdf.h
src/includeWin/i386/szip_adpt.h
src/includeWin/x64
src/includeWin/x64/H5ACpkg.h
src/includeWin/x64/H5ACprivate.h
src/includeWin/x64/H5ACpublic.h
src/includeWin/x64/H5Apkg.h
src/includeWin/x64/H5Aprivate.h
src/includeWin/x64/H5Apublic.h
src/includeWin/x64/H5B2pkg.h
src/includeWin/x64/H5B2private.h
src/includeWin/x64/H5B2public.h
src/includeWin/x64/H5Bpkg.h
src/includeWin/x64/H5Bprivate.h
src/includeWin/x64/H5Bpublic.h
src/includeWin/x64/H5CSprivate.h
src/includeWin/x64/H5Cpkg.h
src/includeWin/x64/H5Cprivate.h
src/includeWin/x64/H5Cpublic.h
src/includeWin/x64/H5Dpkg.h
src/includeWin/x64/H5Dprivate.h
src/includeWin/x64/H5Dpublic.h
src/includeWin/x64/H5Edefin.h
src/includeWin/x64/H5Einit.h
src/includeWin/x64/H5Epkg.h
src/includeWin/x64/H5Eprivate.h
src/includeWin/x64/H5Epubgen.h
src/includeWin/x64/H5Epublic.h
src/includeWin/x64/H5Eterm.h
src/includeWin/x64/H5FDcore.h
src/includeWin/x64/H5FDdirect.h
src/includeWin/x64/H5FDfamily.h
src/includeWin/x64/H5FDlog.h
src/includeWin/x64/H5FDmpi.h
src/includeWin/x64/H5FDmpio.h
src/includeWin/x64/H5FDmpiposix.h
src/includeWin/x64/H5FDmulti.h
src/includeWin/x64/H5FDpkg.h
src/includeWin/x64/H5FDprivate.h
src/includeWin/x64/H5FDpublic.h
src/includeWin/x64/H5FDsec2.h
src/includeWin/x64/H5FDstdio.h
src/includeWin/x64/H5FDwindows.h
src/includeWin/x64/H5FLprivate.h
src/includeWin/x64/H5FOprivate.h
src/includeWin/x64/H5FSpkg.h
src/includeWin/x64/H5FSprivate.h
src/includeWin/x64/H5FSpublic.h
src/includeWin/x64/H5Fpkg.h
src/includeWin/x64/H5Fprivate.h
src/includeWin/x64/H5Fpublic.h
src/includeWin/x64/H5Gpkg.h
src/includeWin/x64/H5Gprivate.h
src/includeWin/x64/H5Gpublic.h
src/includeWin/x64/H5HFpkg.h
src/includeWin/x64/H5HFprivate.h
src/includeWin/x64/H5HFpublic.h
src/includeWin/x64/H5HGpkg.h
src/includeWin/x64/H5HGprivate.h
src/includeWin/x64/H5HGpublic.h
src/includeWin/x64/H5HLpkg.h
src/includeWin/x64/H5HLprivate.h
src/includeWin/x64/H5HLpublic.h
src/includeWin/x64/H5HPprivate.h
src/includeWin/x64/H5Ipkg.h
src/includeWin/x64/H5Iprivate.h
src/includeWin/x64/H5Ipublic.h
src/includeWin/x64/H5Lpkg.h
src/includeWin/x64/H5Lprivate.h
src/includeWin/x64/H5Lpublic.h
src/includeWin/x64/H5MFpkg.h
src/includeWin/x64/H5MFprivate.h
src/includeWin/x64/H5MMprivate.h
src/includeWin/x64/H5MMpublic.h
src/includeWin/x64/H5MPpkg.h
src/includeWin/x64/H5MPprivate.h
src/includeWin/x64/H5Opkg.h
src/includeWin/x64/H5Oprivate.h
src/includeWin/x64/H5Opublic.h
src/includeWin/x64/H5Oshared.h
src/includeWin/x64/H5Ppkg.h
src/includeWin/x64/H5Pprivate.h
src/includeWin/x64/H5Ppublic.h
src/includeWin/x64/H5RCprivate.h
src/includeWin/x64/H5RSprivate.h
src/includeWin/x64/H5Rpkg.h
src/includeWin/x64/H5Rprivate.h
src/includeWin/x64/H5Rpublic.h
src/includeWin/x64/H5SLprivate.h
src/includeWin/x64/H5SMpkg.h
src/includeWin/x64/H5SMprivate.h
src/includeWin/x64/H5STprivate.h
src/includeWin/x64/H5Spkg.h
src/includeWin/x64/H5Sprivate.h
src/includeWin/x64/H5Spublic.h
src/includeWin/x64/H5TSprivate.h
src/includeWin/x64/H5Tpkg.h
src/includeWin/x64/H5Tprivate.h
src/includeWin/x64/H5Tpublic.h
src/includeWin/x64/H5Vprivate.h
src/includeWin/x64/H5WBprivate.h
src/includeWin/x64/H5Zpkg.h
src/includeWin/x64/H5Zprivate.h
src/includeWin/x64/H5Zpublic.h
src/includeWin/x64/H5api_adpt.h
src/includeWin/x64/H5config.h
src/includeWin/x64/H5overflow.h
src/includeWin/x64/H5private.h
src/includeWin/x64/H5pubconf.h
src/includeWin/x64/H5public.h
src/includeWin/x64/H5version.h
src/includeWin/x64/H5win32defs.h
src/includeWin/x64/SZconfig.h
src/includeWin/x64/hdf5.h
src/includeWin/x64/rice.h
src/includeWin/x64/ricehdf.h
src/includeWin/x64/szip_adpt.h
src/includeWin/x64/szlib.h
src/init.c
src/libwin
src/libwin/i386
src/libwin/i386/libhdf5ForBioC-7.dll
src/libwin/i386/libsz-2.dll
src/libwin/x64
src/libwin/x64/libhdf5ForBioC-7.dll
src/libwin/x64/libsz-2.dll
src/readFrame.cpp
tests
tests/testthat
tests/testthat.R
tests/testthat/helper_data.R
tests/testthat/helper_equal_function.R
tests/testthat/test_IO.R
tests/testthat/test_compensation.R
tests/testthat/test_misc.R
tests/testthat/test_ncdfFlowList.R
tests/testthat/test_ncdfFlowSet_accessor.R
vignettes
vignettes/ncdfFlow.Rnw
ncdfFlow documentation built on May 20, 2017, 11:01 p.m.

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