ncdfFlow: ncdfFlow: A package that provides HDF5 based storage for flow cytometry data.

Provides HDF5 storage based methods and functions for manipulation of flow cytometry data.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("ncdfFlow")
AuthorMike Jiang,Greg Finak,N. Gopalakrishnan
Bioconductor views FlowCytometry
Date of publicationNone
MaintainerMike Jiang <wjiang2@fhcrc.org>
LicenseArtistic-2.0
Version2.20.2

View on Bioconductor

Functions

as.flowSet Man page
clone.ncdfFlowSet Man page
colnames<- Man page
colnames<-,ncdfFlowList-method Man page
colnames,ncdfFlowList-method Man page
colnames<-,ncdfFlowSet,ANY-method Man page
colnames<-,ncdfFlowSet-method Man page
compensate,flowSet,data.frame-method Man page
compensate,ncdfFlowSet,ANY-method Man page
compensate,ncdfFlowSet,list-method Man page
densityplot,formula,ncdfFlowList-method Man page
densityplot,formula,ncdfFlowSet-method Man page
filter,ncdfFlowList,filterList-method Man page
filter,ncdfFlowList,filter-method Man page
filter,ncdfFlowList,list-method Man page
getFileName Man page
getIndices Man page
getIndices,ncdfFlowSet,character-method Man page
histogram,formula,ncdfFlowList-method Man page
histogram,formula,ncdfFlowSet-method Man page
initIndices Man page
initIndices,ncdfFlowSet-method Man page
lapply,ncdfFlowList-method Man page
length,ncdfFlowList-method Man page
load_ncfs Man page
markernames<-,ncdfFlowList-method Man page
markernames,ncdfFlowList-method Man page
ncdfFlow Man page
ncdfFlowList Man page
[,ncdfFlowList,ANY,ANY,ANY-method Man page
[[,ncdfFlowList,character-method Man page
[[,ncdfFlowList,character,missing-method Man page
ncdfFlowList-class Man page
[[,ncdfFlowList,logical-method Man page
[[,ncdfFlowList,numeric-method Man page
ncdfFlow-package Man page
ncdfFlowSet Man page
[,ncdfFlowSet,ANY,ANY,ANY-method Man page
[[<-,ncdfFlowSet,ANY,ANY,flowFrame-method Man page
[[,ncdfFlowSet,ANY-method Man page
ncdfFlowSet-class Man page
[[<-,ncdfFlowSet,flowFrame-method Man page
ncdfFlowSet,flowSet-method Man page
ncfsApply Man page
ncfsApply,ncdfFlowSet-method Man page
pData<-,ncdfFlowList,data.frame-method Man page
pData,ncdfFlowList-method Man page
phenoData<-,ncdfFlowList,AnnotatedDataFrame-method Man page
phenoData,ncdfFlowList-method Man page
rbind2,ncdfFlowList,ANY-method Man page
read.ncdfFlowset Man page
read.ncdfFlowSet Man page
replacement method for ncdfFlowSet Man page
sampleNames<- Man page
sampleNames,ncdfFlowList-method Man page
sampleNames<-,ncdfFlowSet,ANY-method Man page
save_ncfs Man page
show Man page
show,ncdfFlowList-method Man page
show,ncdfFlowSet-method Man page
split,ncdfFlowList,character-method Man page
split,ncdfFlowList,factor-method Man page
split,ncdfFlowSet,character-method Man page
split,ncdfFlowSet,factor-method Man page
split,ncdfFlowSet,filter-method Man page
split,ncdfFlowSet,filterResultList-method Man page
split,ncdfFlowSet,list-method Man page
subset.ncdfFlowList Man page
Subset,ncdfFlowList,filter-method Man page
Subset,ncdfFlowList,filterResultList-method Man page
subset.ncdfFlowSet Man page
Subset,ncdfFlowSet,filter-method Man page
Subset,ncdfFlowSet,filterResultList-method Man page
Subset,ncdfFlowSet,list-method Man page
transform,ncdfFlowSet-method Man page
unlink,ncdfFlowSet-method Man page
updateIndices Man page
updateIndices,ncdfFlowSet,character,logical-method Man page
xyplot,formula,ncdfFlowList-method Man page
xyplot,formula,ncdfFlowSet-method Man page

Files

BinaryFiles
DESCRIPTION
NAMESPACE
R
R/AllClasses.R R/AllGeneric.R R/RcppExports.R R/extractFlowFrame.R R/ncdfFlowList-methods.R R/ncdfFlowSet-Subset-methods.R R/ncdfFlowSet-accessors.R R/ncdfFlowSet-plot-methods.R R/ncdfFlowSet-rbind-methods.R R/ncdfFlowSet-split-methods.R R/ncdfIO.R R/subset-functions.R R/subset-methods.R
README
build
build/vignette.rds
cleanup
configure
configure.ac
inst
inst/NEWS
inst/doc
inst/doc/ncdfFlow.R
inst/doc/ncdfFlow.Rnw
inst/doc/ncdfFlow.pdf
inst/include
inst/tests
man
man/Indices.Rd man/as.flowSet.Rd man/clone.ncdfFlowSet.Rd man/extractFlowFrame.Rd man/flowSet-accessor.Rd man/getFileName.Rd man/lapply-methods.Rd man/ncdfFlow.Rd man/ncdfFlowList-class.Rd man/ncdfFlowSet-Subset.Rd man/ncdfFlowSet-class.Rd man/ncdfFlowSet-constructor.Rd man/ncdfFlowSet-split.Rd man/ncfsApply-ncdfFlowSet-method.Rd man/plot.Rd man/rbind2-method.Rd man/read.ncdfFlowSet.Rd man/replacement-method-for-ncdfFlowSet.Rd man/save_ncfs.Rd man/subset-functions.Rd man/subset-methods.Rd man/unlink-ncdfFlowSet-method.Rd
src
src/Makevars.in
src/Makevars.win
src/RcppExports.cpp
src/bitOps.cpp
src/hdfFlow.c
src/hdfFlow.h
src/includeWin
src/includeWin/i386
src/includeWin/i386/H5ACpkg.h
src/includeWin/i386/H5ACprivate.h
src/includeWin/i386/H5ACpublic.h
src/includeWin/i386/H5Apkg.h
src/includeWin/i386/H5Aprivate.h
src/includeWin/i386/H5Apublic.h
src/includeWin/i386/H5B2pkg.h
src/includeWin/i386/H5B2private.h
src/includeWin/i386/H5B2public.h
src/includeWin/i386/H5Bpkg.h
src/includeWin/i386/H5Bprivate.h
src/includeWin/i386/H5Bpublic.h
src/includeWin/i386/H5CSprivate.h
src/includeWin/i386/H5Cpkg.h
src/includeWin/i386/H5Cprivate.h
src/includeWin/i386/H5Cpublic.h
src/includeWin/i386/H5Dpkg.h
src/includeWin/i386/H5Dprivate.h
src/includeWin/i386/H5Dpublic.h
src/includeWin/i386/H5Edefin.h
src/includeWin/i386/H5Einit.h
src/includeWin/i386/H5Epkg.h
src/includeWin/i386/H5Eprivate.h
src/includeWin/i386/H5Epubgen.h
src/includeWin/i386/H5Epublic.h
src/includeWin/i386/H5Eterm.h
src/includeWin/i386/H5FDcore.h
src/includeWin/i386/H5FDdirect.h
src/includeWin/i386/H5FDfamily.h
src/includeWin/i386/H5FDlog.h
src/includeWin/i386/H5FDmpi.h
src/includeWin/i386/H5FDmpio.h
src/includeWin/i386/H5FDmpiposix.h
src/includeWin/i386/H5FDmulti.h
src/includeWin/i386/H5FDpkg.h
src/includeWin/i386/H5FDprivate.h
src/includeWin/i386/H5FDpublic.h
src/includeWin/i386/H5FDsec2.h
src/includeWin/i386/H5FDstdio.h
src/includeWin/i386/H5FDwindows.h
src/includeWin/i386/H5FLprivate.h
src/includeWin/i386/H5FOprivate.h
src/includeWin/i386/H5FSpkg.h
src/includeWin/i386/H5FSprivate.h
src/includeWin/i386/H5FSpublic.h
src/includeWin/i386/H5Fpkg.h
src/includeWin/i386/H5Fprivate.h
src/includeWin/i386/H5Fpublic.h
src/includeWin/i386/H5Gpkg.h
src/includeWin/i386/H5Gprivate.h
src/includeWin/i386/H5Gpublic.h
src/includeWin/i386/H5HFpkg.h
src/includeWin/i386/H5HFprivate.h
src/includeWin/i386/H5HFpublic.h
src/includeWin/i386/H5HGpkg.h
src/includeWin/i386/H5HGprivate.h
src/includeWin/i386/H5HGpublic.h
src/includeWin/i386/H5HLpkg.h
src/includeWin/i386/H5HLprivate.h
src/includeWin/i386/H5HLpublic.h
src/includeWin/i386/H5HPprivate.h
src/includeWin/i386/H5Ipkg.h
src/includeWin/i386/H5Iprivate.h
src/includeWin/i386/H5Ipublic.h
src/includeWin/i386/H5Lpkg.h
src/includeWin/i386/H5Lprivate.h
src/includeWin/i386/H5Lpublic.h
src/includeWin/i386/H5MFpkg.h
src/includeWin/i386/H5MFprivate.h
src/includeWin/i386/H5MMprivate.h
src/includeWin/i386/H5MMpublic.h
src/includeWin/i386/H5MPpkg.h
src/includeWin/i386/H5MPprivate.h
src/includeWin/i386/H5Opkg.h
src/includeWin/i386/H5Oprivate.h
src/includeWin/i386/H5Opublic.h
src/includeWin/i386/H5Oshared.h
src/includeWin/i386/H5Ppkg.h
src/includeWin/i386/H5Pprivate.h
src/includeWin/i386/H5Ppublic.h
src/includeWin/i386/H5RCprivate.h
src/includeWin/i386/H5RSprivate.h
src/includeWin/i386/H5Rpkg.h
src/includeWin/i386/H5Rprivate.h
src/includeWin/i386/H5Rpublic.h
src/includeWin/i386/H5SLprivate.h
src/includeWin/i386/H5SMpkg.h
src/includeWin/i386/H5SMprivate.h
src/includeWin/i386/H5STprivate.h
src/includeWin/i386/H5Spkg.h
src/includeWin/i386/H5Sprivate.h
src/includeWin/i386/H5Spublic.h
src/includeWin/i386/H5TSprivate.h
src/includeWin/i386/H5Tpkg.h
src/includeWin/i386/H5Tprivate.h
src/includeWin/i386/H5Tpublic.h
src/includeWin/i386/H5Vprivate.h
src/includeWin/i386/H5WBprivate.h
src/includeWin/i386/H5Zpkg.h
src/includeWin/i386/H5Zprivate.h
src/includeWin/i386/H5Zpublic.h
src/includeWin/i386/H5api_adpt.h
src/includeWin/i386/H5config.h
src/includeWin/i386/H5overflow.h
src/includeWin/i386/H5private.h
src/includeWin/i386/H5pubconf.h
src/includeWin/i386/H5public.h
src/includeWin/i386/H5version.h
src/includeWin/i386/H5win32defs.h
src/includeWin/i386/SZconfig.h
src/includeWin/i386/hdf5.h
src/includeWin/i386/rice.h
src/includeWin/i386/ricehdf.h
src/includeWin/i386/szip_adpt.h
src/includeWin/x64
src/includeWin/x64/H5ACpkg.h
src/includeWin/x64/H5ACprivate.h
src/includeWin/x64/H5ACpublic.h
src/includeWin/x64/H5Apkg.h
src/includeWin/x64/H5Aprivate.h
src/includeWin/x64/H5Apublic.h
src/includeWin/x64/H5B2pkg.h
src/includeWin/x64/H5B2private.h
src/includeWin/x64/H5B2public.h
src/includeWin/x64/H5Bpkg.h
src/includeWin/x64/H5Bprivate.h
src/includeWin/x64/H5Bpublic.h
src/includeWin/x64/H5CSprivate.h
src/includeWin/x64/H5Cpkg.h
src/includeWin/x64/H5Cprivate.h
src/includeWin/x64/H5Cpublic.h
src/includeWin/x64/H5Dpkg.h
src/includeWin/x64/H5Dprivate.h
src/includeWin/x64/H5Dpublic.h
src/includeWin/x64/H5Edefin.h
src/includeWin/x64/H5Einit.h
src/includeWin/x64/H5Epkg.h
src/includeWin/x64/H5Eprivate.h
src/includeWin/x64/H5Epubgen.h
src/includeWin/x64/H5Epublic.h
src/includeWin/x64/H5Eterm.h
src/includeWin/x64/H5FDcore.h
src/includeWin/x64/H5FDdirect.h
src/includeWin/x64/H5FDfamily.h
src/includeWin/x64/H5FDlog.h
src/includeWin/x64/H5FDmpi.h
src/includeWin/x64/H5FDmpio.h
src/includeWin/x64/H5FDmpiposix.h
src/includeWin/x64/H5FDmulti.h
src/includeWin/x64/H5FDpkg.h
src/includeWin/x64/H5FDprivate.h
src/includeWin/x64/H5FDpublic.h
src/includeWin/x64/H5FDsec2.h
src/includeWin/x64/H5FDstdio.h
src/includeWin/x64/H5FDwindows.h
src/includeWin/x64/H5FLprivate.h
src/includeWin/x64/H5FOprivate.h
src/includeWin/x64/H5FSpkg.h
src/includeWin/x64/H5FSprivate.h
src/includeWin/x64/H5FSpublic.h
src/includeWin/x64/H5Fpkg.h
src/includeWin/x64/H5Fprivate.h
src/includeWin/x64/H5Fpublic.h
src/includeWin/x64/H5Gpkg.h
src/includeWin/x64/H5Gprivate.h
src/includeWin/x64/H5Gpublic.h
src/includeWin/x64/H5HFpkg.h
src/includeWin/x64/H5HFprivate.h
src/includeWin/x64/H5HFpublic.h
src/includeWin/x64/H5HGpkg.h
src/includeWin/x64/H5HGprivate.h
src/includeWin/x64/H5HGpublic.h
src/includeWin/x64/H5HLpkg.h
src/includeWin/x64/H5HLprivate.h
src/includeWin/x64/H5HLpublic.h
src/includeWin/x64/H5HPprivate.h
src/includeWin/x64/H5Ipkg.h
src/includeWin/x64/H5Iprivate.h
src/includeWin/x64/H5Ipublic.h
src/includeWin/x64/H5Lpkg.h
src/includeWin/x64/H5Lprivate.h
src/includeWin/x64/H5Lpublic.h
src/includeWin/x64/H5MFpkg.h
src/includeWin/x64/H5MFprivate.h
src/includeWin/x64/H5MMprivate.h
src/includeWin/x64/H5MMpublic.h
src/includeWin/x64/H5MPpkg.h
src/includeWin/x64/H5MPprivate.h
src/includeWin/x64/H5Opkg.h
src/includeWin/x64/H5Oprivate.h
src/includeWin/x64/H5Opublic.h
src/includeWin/x64/H5Oshared.h
src/includeWin/x64/H5Ppkg.h
src/includeWin/x64/H5Pprivate.h
src/includeWin/x64/H5Ppublic.h
src/includeWin/x64/H5RCprivate.h
src/includeWin/x64/H5RSprivate.h
src/includeWin/x64/H5Rpkg.h
src/includeWin/x64/H5Rprivate.h
src/includeWin/x64/H5Rpublic.h
src/includeWin/x64/H5SLprivate.h
src/includeWin/x64/H5SMpkg.h
src/includeWin/x64/H5SMprivate.h
src/includeWin/x64/H5STprivate.h
src/includeWin/x64/H5Spkg.h
src/includeWin/x64/H5Sprivate.h
src/includeWin/x64/H5Spublic.h
src/includeWin/x64/H5TSprivate.h
src/includeWin/x64/H5Tpkg.h
src/includeWin/x64/H5Tprivate.h
src/includeWin/x64/H5Tpublic.h
src/includeWin/x64/H5Vprivate.h
src/includeWin/x64/H5WBprivate.h
src/includeWin/x64/H5Zpkg.h
src/includeWin/x64/H5Zprivate.h
src/includeWin/x64/H5Zpublic.h
src/includeWin/x64/H5api_adpt.h
src/includeWin/x64/H5config.h
src/includeWin/x64/H5overflow.h
src/includeWin/x64/H5private.h
src/includeWin/x64/H5pubconf.h
src/includeWin/x64/H5public.h
src/includeWin/x64/H5version.h
src/includeWin/x64/H5win32defs.h
src/includeWin/x64/SZconfig.h
src/includeWin/x64/hdf5.h
src/includeWin/x64/rice.h
src/includeWin/x64/ricehdf.h
src/includeWin/x64/szip_adpt.h
src/includeWin/x64/szlib.h
src/init.c
src/libwin
src/libwin/i386
src/libwin/i386/libhdf5ForBioC-7.dll
src/libwin/i386/libsz-2.dll
src/libwin/x64
src/libwin/x64/libhdf5ForBioC-7.dll
src/libwin/x64/libsz-2.dll
src/readFrame.cpp
tests
tests/testthat
tests/testthat.R tests/testthat/helper_data.R tests/testthat/helper_equal_function.R tests/testthat/test_IO.R tests/testthat/test_compensation.R tests/testthat/test_misc.R tests/testthat/test_ncdfFlowList.R tests/testthat/test_ncdfFlowSet_accessor.R
vignettes
vignettes/ncdfFlow.Rnw

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