ncdfFlowList-class: a class that stores multiple ncdfFlowSet objects

In ncdfFlow: ncdfFlow: A package that provides HDF5 based storage for flow cytometry data.

Description

It is a list of ncdfFlowSet objects

Usage

ncdfFlowList(x, samples = NULL)

## S4 method for signature 'ncdfFlowList'
show(object)

Arguments

x	list of ncdfFlowSet objects
samples	integer see samples slot of ncdfFlowList class. or character that specifiy the order to samples. If not given then reconstruct the index.
object	ncdfFlowList

Value

ncdfFlowList-class

Objects from the Class

Objects can be created by coercing a list of ncdfFlowSet objects as("ncdfFlowList",nclist = .... #a list of ncdfFlowSet objects)

Slots

data:

A list containing the ncdfFlowSet objects.

samples:

A integer vector containing the index of the ncdfFlowSet object to which each sample belongs. The name of the vector is the sample names that determine the order of samples exposed to the user, which can be different from the physical storing order.

See Also

ncdfFlowSet

Examples

data(GvHD)
nc1 <- ncdfFlowSet(GvHD[1])
nc2 <- ncdfFlowSet(GvHD[2])
nc3 <- ncdfFlowSet(GvHD[3])
list1 <- list(nc1, nc2, nc3)
#coerce from list to ncdfFlowList
nclist <- ncdfFlowList(list1)
nclist
#coerce(collapse) from ncdfFlowList to a single flowFrame
collapsedData <- as(nclist, "flowFrame")
collapsedData

ncdfFlow documentation built on Nov. 8, 2020, 7:52 p.m.