as.flowSet: convert from a 'ncdfFlowSet' to a 'flowSet'
In ncdfFlow: ncdfFlow: A package that provides HDF5 based storage for flow cytometry data.
Description
Usage
Arguments
Examples
View source: R/ncdfFlowSet-accessors.R
Description
The main purpose of this API is to convert the archived data (stored in ncdfFlowSet) to flowSet
when the speed is more concerned than memory effieciency.
Although ncdfFlowSet is designed to minimize the disk-IO cost, so usually it is not necessary to do such coersion.
Usage
1
as.flowSet(from, top)
Arguments
from
a ncdfFlowSet
top
integer specifies a certain number of samples are evenly selected for the coersion.
If this argument is missing, then coerce all the samples within the ncdfFlowSet.
It is to be used with caution because it can incur the huge memory consumption given the flowSet is all-in-memory data structure.
Examples
1
2
3
data(GvHD)
nc1 <- ncdfFlowSet(GvHD[1:4])
fs <- as.flowSet(nc1)
ncdfFlow documentation built on Nov. 8, 2020, 7:52 p.m.
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Description Usage Arguments Examples
View source: R/ncdfFlowSet-accessors.R
Description
The main purpose of this API is to convert the archived data (stored in ncdfFlowSet) to flowSet
when the speed is more concerned than memory effieciency.
Although ncdfFlowSet is designed to minimize the disk-IO cost, so usually it is not necessary to do such coersion.
Usage
1 | as.flowSet(from, top)
|
Arguments
from |
a |
top |
|
Examples
1 2 3 | data(GvHD)
nc1 <- ncdfFlowSet(GvHD[1:4])
fs <- as.flowSet(nc1)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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