flowSet-accessor: Accessors compatible with those for 'flowSet'

Description Usage Arguments

Description

Accessors compatible with those for flowSet

Usage

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## S4 method for signature 'ncdfFlowList,filter'
filter(
  x,
  filter,
  method = "missing",
  sides = "missing",
  circular = "missing",
  init = "missing"
)

## S4 method for signature 'ncdfFlowList,filterList'
filter(
  x,
  filter,
  method = "missing",
  sides = "missing",
  circular = "missing",
  init = "missing"
)

## S4 method for signature 'ncdfFlowList,list'
filter(
  x,
  filter,
  method = "missing",
  sides = "missing",
  circular = "missing",
  init = "missing"
)

## S4 method for signature 'ncdfFlowList'
length(x)

## S4 method for signature 'ncdfFlowList'
sampleNames(object)

## S4 method for signature 'ncdfFlowList'
phenoData(object)

## S4 method for signature 'ncdfFlowList'
pData(object)

## S4 replacement method for signature 'ncdfFlowList,data.frame'
pData(object) <- value

## S4 method for signature 'ncdfFlowList'
colnames(x)

## S4 replacement method for signature 'ncdfFlowList'
colnames(x) <- value

## S4 method for signature 'ncdfFlowList'
markernames(object)

## S4 replacement method for signature 'ncdfFlowList'
markernames(object) <- value

## S4 method for signature 'ncdfFlowSet,ANY'
compensate(x, spillover)

## S4 method for signature 'flowSet,data.frame'
compensate(x, spillover)

## S4 method for signature 'ncdfFlowSet,list'
compensate(x, spillover)

## S4 method for signature 'ncdfFlowSet'
transform(`_data`, translist, ...)

## S4 replacement method for signature 'ncdfFlowSet,ANY'
sampleNames(object) <- value

## S4 replacement method for signature 'ncdfFlowSet'
colnames(x) <- value

## S4 method for signature 'ncdfFlowSet,list'
keyword(object, keyword)

## S4 replacement method for signature 'ncdfFlowSet,list'
keyword(object) <- value

Arguments

x

ncdfFlowSet

filter

filter to be applied

method

missing not used

sides

missing not used

circular

missing not used

init

missing not used

object

ncdfFlowList

value

character vector

spillover

spillover matrix

_data

ncdfFlowSet

translist

a 'transformList' object or a list of 'transformList' objects

...

other arguments

keyword

list


ncdfFlow documentation built on Nov. 8, 2020, 7:52 p.m.