flowFP: Fingerprinting for Flow Cytometry

Share:

Fingerprint generation of flow cytometry data, used to facilitate the application of machine learning and datamining tools for flow cytometry.

Author
Herb Holyst <holyst@mail.med.upenn.edu>, Wade Rogers <rogersw@mail.med.upenn.edu>
Date of publication
None
Maintainer
Herb Holyst <holyst@mail.med.upenn.edu>
License
Artistic-2.0
Version
1.32.0

View on Bioconductor

Man pages

append-methods
Methods to append flowFP fingerprints to a flowFPPlex
binBoundary-methods
Return bin boundaries for a flowFPModel
counts-methods
Method for getting fingerprint data.
flowFP
Fingerprint constructor
flowFP-class
Fingerprint class description.
flowFPModel
Fingerprint model constructor
flowFPModel-class
Fingerprint model class description.
flowFP-package
Package overview
flowFPPlex
Fingerprint collection constructor.
flowFPPlex-class
Fingerprint collection class description.
fs1
Example FCS flowSet
fs2
Example FCS flowSet
hasClasses-methods
Returns TRUE if the flowFP has a class factor for its...
index-methods
Indexing methods for flowFP and flowFPPlex
is.flowFP
Test to see if object is a flowFP
is.flowFPModel
Test to see if object is a flowFPModel
is.flowFPPlex
Test to see if object is a flowFPPlex
length-methods
The number of fingerprints in a flowFPPlex
name-methods
Get Model Name
nFeatures-methods
Returns the number of features in an object.
nInstances-methods
Returns the number of instances in an object.
nRecursions-methods
Methods to set or get nRecursions
parameters-methods
Return the parameters considered for fingerprinting
plate
96 well plate data.
plot-methods
Methods for visualizing flowFP objects
sampleClasses-methods
Gets/Sets the sample classes for a fingerprint.
sampleNames-methods
Methods to return sample names from a flowFP object.
show-methods
Methods to view flowFP objects
summary-methods
Summerizes a flowFP object.
tags-methods
Returns tags from a flowFP object.

Files in this package

flowFP/DESCRIPTION
flowFP/NAMESPACE
flowFP/R
flowFP/R/AllClasses.R
flowFP/R/AllGenerics.R
flowFP/R/flowFP-utils.R
flowFP/R/flowFP.R
flowFP/R/flowFPModel.R
flowFP/R/flowFPPlex.R
flowFP/R/plot-fancy.R
flowFP/R/plot-grid.R
flowFP/R/plot-model.R
flowFP/R/plot-plate.R
flowFP/R/plot-qc.R
flowFP/R/plot-stack.R
flowFP/R/plot-tangle.R
flowFP/R/plot-utils.R
flowFP/README
flowFP/build
flowFP/build/vignette.rds
flowFP/cleanup
flowFP/configure
flowFP/configure.ac
flowFP/data
flowFP/data/datalist
flowFP/data/fs1.rda
flowFP/data/fs2.rda
flowFP/data/plate.rda
flowFP/inst
flowFP/inst/CITATION
flowFP/inst/NEWS
flowFP/inst/doc
flowFP/inst/doc/flowFP_HowTo.R
flowFP/inst/doc/flowFP_HowTo.Rnw
flowFP/inst/doc/flowFP_HowTo.pdf
flowFP/man
flowFP/man/append-methods.Rd
flowFP/man/binBoundary-methods.Rd
flowFP/man/counts-methods.Rd
flowFP/man/flowFP-class.Rd
flowFP/man/flowFP-package.Rd
flowFP/man/flowFP.Rd
flowFP/man/flowFPModel-class.Rd
flowFP/man/flowFPModel.Rd
flowFP/man/flowFPPlex-class.Rd
flowFP/man/flowFPPlex.Rd
flowFP/man/fs1.Rd
flowFP/man/fs2.Rd
flowFP/man/hasClasses-methods.Rd
flowFP/man/index-methods.Rd
flowFP/man/is.flowFP.Rd
flowFP/man/is.flowFPModel.Rd
flowFP/man/is.flowFPPlex.Rd
flowFP/man/length-methods.Rd
flowFP/man/nFeatures-methods.Rd
flowFP/man/nInstances-methods.Rd
flowFP/man/nRecursions-methods.Rd
flowFP/man/name-methods.Rd
flowFP/man/parameters-methods.Rd
flowFP/man/plate.Rd
flowFP/man/plot-methods.Rd
flowFP/man/sampleClasses-methods.Rd
flowFP/man/sampleNames-methods.Rd
flowFP/man/show-methods.Rd
flowFP/man/summary-methods.Rd
flowFP/man/tags-methods.Rd
flowFP/src
flowFP/src/Makevars.in
flowFP/src/cutest
flowFP/src/cutest/CuTest.c
flowFP/src/cutest/CuTest.h
flowFP/src/cutest/Makefile
flowFP/src/cutest/README
flowFP/src/cutest/license.txt
flowFP/src/cutest/make-tests.sh
flowFP/src/cutest/test_example.c
flowFP/src/cutest/test_idx_lut.c
flowFP/src/cutest/test_median.c
flowFP/src/cutest/test_variance.c
flowFP/src/flowFP.c
flowFP/src/flowFP.h
flowFP/src/init.c
flowFP/src/split_utils.c
flowFP/tests
flowFP/tests/GNUmakefile
flowFP/tests/doRUnit.R
flowFP/tests/unitTests
flowFP/tests/unitTests/runit.flowFP.R
flowFP/tests/unitTests/runit.flowFPModel.R
flowFP/tests/unitTests/runit.flowFPPlex.R
flowFP/vignettes
flowFP/vignettes/flowFP.bib
flowFP/vignettes/flowFP_HowTo.Rnw