flowFP: Fingerprinting for Flow Cytometry

Fingerprint generation of flow cytometry data, used to facilitate the application of machine learning and datamining tools for flow cytometry.

AuthorHerb Holyst <holyst@mail.med.upenn.edu>, Wade Rogers <rogersw@mail.med.upenn.edu>
Date of publicationNone
MaintainerHerb Holyst <holyst@mail.med.upenn.edu>
LicenseArtistic-2.0
Version1.32.0

View on Bioconductor

Man pages

append-methods: Methods to append flowFP fingerprints to a flowFPPlex

binBoundary-methods: Return bin boundaries for a flowFPModel

counts-methods: Method for getting fingerprint data.

flowFP: Fingerprint constructor

flowFP-class: Fingerprint class description.

flowFPModel: Fingerprint model constructor

flowFPModel-class: Fingerprint model class description.

flowFP-package: Package overview

flowFPPlex: Fingerprint collection constructor.

flowFPPlex-class: Fingerprint collection class description.

fs1: Example FCS flowSet

fs2: Example FCS flowSet

hasClasses-methods: Returns TRUE if the flowFP has a class factor for its...

index-methods: Indexing methods for flowFP and flowFPPlex

is.flowFP: Test to see if object is a flowFP

is.flowFPModel: Test to see if object is a flowFPModel

is.flowFPPlex: Test to see if object is a flowFPPlex

length-methods: The number of fingerprints in a flowFPPlex

name-methods: Get Model Name

nFeatures-methods: Returns the number of features in an object.

nInstances-methods: Returns the number of instances in an object.

nRecursions-methods: Methods to set or get nRecursions

parameters-methods: Return the parameters considered for fingerprinting

plate: 96 well plate data.

plot-methods: Methods for visualizing flowFP objects

sampleClasses-methods: Gets/Sets the sample classes for a fingerprint.

sampleNames-methods: Methods to return sample names from a flowFP object.

show-methods: Methods to view flowFP objects

summary-methods: Summerizes a flowFP object.

tags-methods: Returns tags from a flowFP object.

Functions

append,flowFPPlex,flowFP-method Man page
append,flowFPPlex,flowFPPlex-method Man page
append,flowFPPlex,list-method Man page
append-methods Man page
binBoundary Man page
binBoundary,flowFP-method Man page
binBoundary,flowFPModel-method Man page
binBoundary-methods Man page
counts Man page
counts,flowFP-method Man page
counts,flowFPPlex-method Man page
flowFP Man page
[,flowFP,character-method Man page
flowFP-class Man page
flowFPModel Man page
flowFPModel-class Man page
[,flowFP,numeric-method Man page
flowFP-package Man page
flowFPPlex Man page
[,flowFPPlex,ANY-method Man page
[[,flowFPPlex,ANY-method Man page
flowFPPlex-class Man page
[[<-,flowFPPlex,numeric,ANY,flowFP-method Man page
fs1 Man page
fs2 Man page
hasClasses Man page
hasClasses,flowFP-method Man page
hasClasses,flowFPPlex-method Man page
hasClasses-methods Man page
is.flowFP Man page
is.flowFPModel Man page
is.flowFPPlex Man page
length,flowFPPlex-method Man page
length<-,flowFPPlex,numeric-method Man page
length-methods Man page
[-methods Man page
[[-methods Man page
name Man page
name,flowFP-method Man page
name,flowFPModel-method Man page
name,flowFPPlex-method Man page
name-methods Man page
nFeatures Man page
nFeatures,flowFP-method Man page
nFeatures,flowFPModel-method Man page
nFeatures,flowFPPlex-method Man page
nFeatures-methods Man page
nInstances Man page
nInstances,flowFP-method Man page
nInstances,flowFPPlex-method Man page
nInstances-methods Man page
nRecursions Man page
nRecursions<- Man page
nRecursions,flowFP-method Man page
nRecursions,flowFPModel-method Man page
nRecursions<-,flowFPModel,numeric-method Man page
nRecursions<-,flowFP,numeric-method Man page
nRecursions,flowFPPlex-method Man page
nRecursions-methods Man page
parameters,flowFP-method Man page
parameters,flowFPModel-method Man page
parameters-methods Man page
plate Man page
plot,flowFP,flowFrame-method Man page
plot,flowFP,flowSet-method Man page
plot,flowFP,missing-method Man page
plot,flowFPModel,flowFrame-method Man page
plot,flowFPModel,flowSet-method Man page
plot,flowFPModel,missing-method Man page
plot,flowFPPlex,missing-method Man page
plot-methods Man page
sampleClasses Man page
sampleClasses<- Man page
sampleClasses<-,flowFP-method Man page
sampleClasses,flowFP-method Man page
sampleClasses<-,flowFPPlex-method Man page
sampleClasses,flowFPPlex-method Man page
sampleClasses-methods Man page
sampleNames Man page
sampleNames,flowFP-method Man page
sampleNames,flowFPPlex-method Man page
sampleNames-methods Man page
show,flowFP-method Man page
show,flowFPModel-method Man page
show,flowFPPlex-method Man page
show-methods Man page
summary,flowFP-method Man page
summary-methods Man page
tags Man page
tags,flowFP-method Man page
tags-methods Man page

Files

flowFP/DESCRIPTION
flowFP/NAMESPACE
flowFP/R
flowFP/R/AllClasses.R flowFP/R/AllGenerics.R flowFP/R/flowFP-utils.R flowFP/R/flowFP.R flowFP/R/flowFPModel.R flowFP/R/flowFPPlex.R flowFP/R/plot-fancy.R flowFP/R/plot-grid.R flowFP/R/plot-model.R flowFP/R/plot-plate.R flowFP/R/plot-qc.R flowFP/R/plot-stack.R flowFP/R/plot-tangle.R flowFP/R/plot-utils.R
flowFP/README
flowFP/build
flowFP/build/vignette.rds
flowFP/cleanup
flowFP/configure
flowFP/configure.ac
flowFP/data
flowFP/data/datalist
flowFP/data/fs1.rda
flowFP/data/fs2.rda
flowFP/data/plate.rda
flowFP/inst
flowFP/inst/CITATION
flowFP/inst/NEWS
flowFP/inst/doc
flowFP/inst/doc/flowFP_HowTo.R
flowFP/inst/doc/flowFP_HowTo.Rnw
flowFP/inst/doc/flowFP_HowTo.pdf
flowFP/man
flowFP/man/append-methods.Rd flowFP/man/binBoundary-methods.Rd flowFP/man/counts-methods.Rd flowFP/man/flowFP-class.Rd flowFP/man/flowFP-package.Rd flowFP/man/flowFP.Rd flowFP/man/flowFPModel-class.Rd flowFP/man/flowFPModel.Rd flowFP/man/flowFPPlex-class.Rd flowFP/man/flowFPPlex.Rd flowFP/man/fs1.Rd flowFP/man/fs2.Rd flowFP/man/hasClasses-methods.Rd flowFP/man/index-methods.Rd flowFP/man/is.flowFP.Rd flowFP/man/is.flowFPModel.Rd flowFP/man/is.flowFPPlex.Rd flowFP/man/length-methods.Rd flowFP/man/nFeatures-methods.Rd flowFP/man/nInstances-methods.Rd flowFP/man/nRecursions-methods.Rd flowFP/man/name-methods.Rd flowFP/man/parameters-methods.Rd flowFP/man/plate.Rd flowFP/man/plot-methods.Rd flowFP/man/sampleClasses-methods.Rd flowFP/man/sampleNames-methods.Rd flowFP/man/show-methods.Rd flowFP/man/summary-methods.Rd flowFP/man/tags-methods.Rd
flowFP/src
flowFP/src/Makevars.in
flowFP/src/cutest
flowFP/src/cutest/CuTest.c
flowFP/src/cutest/CuTest.h
flowFP/src/cutest/Makefile
flowFP/src/cutest/README
flowFP/src/cutest/license.txt
flowFP/src/cutest/make-tests.sh
flowFP/src/cutest/test_example.c
flowFP/src/cutest/test_idx_lut.c
flowFP/src/cutest/test_median.c
flowFP/src/cutest/test_variance.c
flowFP/src/flowFP.c
flowFP/src/flowFP.h
flowFP/src/init.c
flowFP/src/split_utils.c
flowFP/tests
flowFP/tests/GNUmakefile
flowFP/tests/doRUnit.R
flowFP/tests/unitTests
flowFP/tests/unitTests/runit.flowFP.R
flowFP/tests/unitTests/runit.flowFPModel.R
flowFP/tests/unitTests/runit.flowFPPlex.R
flowFP/vignettes
flowFP/vignettes/flowFP.bib
flowFP/vignettes/flowFP_HowTo.Rnw

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