flowBeads: flowBeads: Analysis of flow bead data

This package extends flowCore to provide functionality specific to bead data. One of the goals of this package is to automate analysis of bead data for the purpose of normalisation.

Author
Nikolas Pontikos
Date of publication
None
Maintainer
Nikolas Pontikos <n.pontikos@gmail.com>
License
Artistic-2.0
Version
1.12.0

View on Bioconductor

Man pages

absoluteNormalise-methods
absoluteNormalise
BeadFlowFrame-class
BeadFlowFrame
beads1
Dako beads on day 1
beads2
Dako beads on day 2
cytocalmef
Cytocal config file
dakomef
Dako config file
flowBeads-package
flowBeads
gateBeads-methods
gateBeads
GatedBeadFlowFrame-class
GatedBeadFlowFrame
generateReport-methods
generateReport
getClusteringStats-methods
getClusteringStats
getDate-methods
getDate
getMEFparams-methods
getMEFparams
getMEFtransform-methods
getMEFtransform
getParams-methods
getParams
getTransformFunction-methods
getTransformFunction
hasMEF-methods
hasMEF
length-methods
length
mefTransform
Logicle transformation constructor
plot-methods
Plot the results of the clustering. Plot only the requested...
relativeNormalise-methods
relativeNormalise
show-methods
BeadFlowFrame
toMEF-methods
toMEF

Files in this package

flowBeads/DESCRIPTION
flowBeads/NAMESPACE
flowBeads/R
flowBeads/R/AllClasses.R
flowBeads/R/AllGenerics.R
flowBeads/R/beads.R
flowBeads/R/beads1-data.R
flowBeads/R/beads2-data.R
flowBeads/R/cytocalmef-data.R
flowBeads/R/dakomef-data.R
flowBeads/R/flowBeads-package.R
flowBeads/R/get-methods.R
flowBeads/R/plot-methods.R
flowBeads/R/show-methods.R
flowBeads/README.md
flowBeads/build
flowBeads/build.R
flowBeads/build/vignette.rds
flowBeads/data
flowBeads/data/beads1.rda
flowBeads/data/beads2.rda
flowBeads/data/cytocalmef.csv.gz
flowBeads/data/dakomef.csv.gz
flowBeads/data/datalist
flowBeads/examples
flowBeads/examples/example.R
flowBeads/inst
flowBeads/inst/NEWS
flowBeads/inst/doc
flowBeads/inst/doc/HowTo-flowBeads.R
flowBeads/inst/doc/HowTo-flowBeads.Rnw
flowBeads/inst/doc/HowTo-flowBeads.pdf
flowBeads/inst/extdata
flowBeads/inst/extdata/beads1.fcs
flowBeads/inst/extdata/beads2.fcs
flowBeads/inst/extdata/cytocalmef.csv
flowBeads/inst/extdata/dakomef.csv
flowBeads/inst/markdownTemplates
flowBeads/inst/markdownTemplates/bead-report.Rmd
flowBeads/inst/markdownTemplates/bead-report.md
flowBeads/inst/markdownTemplates/bead-report2.Rmd
flowBeads/man
flowBeads/man/BeadFlowFrame-class.Rd
flowBeads/man/GatedBeadFlowFrame-class.Rd
flowBeads/man/absoluteNormalise-methods.Rd
flowBeads/man/beads1.Rd
flowBeads/man/beads2.Rd
flowBeads/man/cytocalmef.Rd
flowBeads/man/dakomef.Rd
flowBeads/man/flowBeads-package.Rd
flowBeads/man/gateBeads-methods.Rd
flowBeads/man/generateReport-methods.Rd
flowBeads/man/getClusteringStats-methods.Rd
flowBeads/man/getDate-methods.Rd
flowBeads/man/getMEFparams-methods.Rd
flowBeads/man/getMEFtransform-methods.Rd
flowBeads/man/getParams-methods.Rd
flowBeads/man/getTransformFunction-methods.Rd
flowBeads/man/hasMEF-methods.Rd
flowBeads/man/length-methods.Rd
flowBeads/man/mefTransform.Rd
flowBeads/man/plot-methods.Rd
flowBeads/man/relativeNormalise-methods.Rd
flowBeads/man/show-methods.Rd
flowBeads/man/toMEF-methods.Rd
flowBeads/vignettes
flowBeads/vignettes/HowTo-flowBeads.Rnw
flowBeads/vignettes/HowTo-flowBeads.bbl
flowBeads/vignettes/beads.bib