flowBeads: flowBeads: Analysis of flow bead data

This package extends flowCore to provide functionality specific to bead data. One of the goals of this package is to automate analysis of bead data for the purpose of normalisation.

AuthorNikolas Pontikos
Date of publicationNone
MaintainerNikolas Pontikos <n.pontikos@gmail.com>
LicenseArtistic-2.0
Version1.12.0

View on Bioconductor

Functions

absoluteNormalise Man page
absoluteNormalise,GatedBeadFlowFrame,data.frame-method Man page
BeadFlowFrame Man page
BeadFlowFrame-class Man page
beads1 Man page
beads2 Man page
cytocalmef Man page
dakomef Man page
dBeadFlowFrame Man page
flowBeads Man page
flowBeads-package Man page
gateBeads Man page
gateBeads,BeadFlowFrame-method Man page
GatedBeadFlowFrame Man page
GatedBeadFlowFrame-class Man page
generateReport Man page
generateReport,GatedBeadFlowFrame,character-method Man page
getClusteringStats Man page
getClusteringStats,GatedBeadFlowFrame-method Man page
getDate Man page
getDate,flowFrame-method Man page
getMEFparams Man page
getMEFparams,BeadFlowFrame-method Man page
getMEFtransform Man page
getMEFtransform,GatedBeadFlowFrame-method Man page
getParams Man page
getParams,flowFrame-method Man page
getTransformFunction Man page
getTransformFunction,BeadFlowFrame-method Man page
hasMEF Man page
hasMEF,BeadFlowFrame,character-method Man page
length Man page
length,flowFrame-method Man page
mefTransform Man page
plot Man page
plot,BeadFlowFrame,character-method Man page
plot,BeadFlowFrame,missing-method Man page
plot,GatedBeadFlowFrame,character-method Man page
relativeNormalise Man page
relativeNormalise,GatedBeadFlowFrame,GatedBeadFlowFrame-method Man page
show Man page
toMEF Man page
toMEF,GatedBeadFlowFrame,flowFrame-method Man page

Files

flowBeads/DESCRIPTION
flowBeads/NAMESPACE
flowBeads/R
flowBeads/R/AllClasses.R flowBeads/R/AllGenerics.R flowBeads/R/beads.R flowBeads/R/beads1-data.R flowBeads/R/beads2-data.R flowBeads/R/cytocalmef-data.R flowBeads/R/dakomef-data.R flowBeads/R/flowBeads-package.R flowBeads/R/get-methods.R flowBeads/R/plot-methods.R flowBeads/R/show-methods.R
flowBeads/README.md
flowBeads/build
flowBeads/build.R
flowBeads/build/vignette.rds
flowBeads/data
flowBeads/data/beads1.rda
flowBeads/data/beads2.rda
flowBeads/data/cytocalmef.csv.gz
flowBeads/data/dakomef.csv.gz
flowBeads/data/datalist
flowBeads/examples
flowBeads/examples/example.R
flowBeads/inst
flowBeads/inst/NEWS
flowBeads/inst/doc
flowBeads/inst/doc/HowTo-flowBeads.R
flowBeads/inst/doc/HowTo-flowBeads.Rnw
flowBeads/inst/doc/HowTo-flowBeads.pdf
flowBeads/inst/extdata
flowBeads/inst/extdata/beads1.fcs
flowBeads/inst/extdata/beads2.fcs
flowBeads/inst/extdata/cytocalmef.csv
flowBeads/inst/extdata/dakomef.csv
flowBeads/inst/markdownTemplates
flowBeads/inst/markdownTemplates/bead-report.Rmd
flowBeads/inst/markdownTemplates/bead-report.md
flowBeads/inst/markdownTemplates/bead-report2.Rmd
flowBeads/man
flowBeads/man/BeadFlowFrame-class.Rd flowBeads/man/GatedBeadFlowFrame-class.Rd flowBeads/man/absoluteNormalise-methods.Rd flowBeads/man/beads1.Rd flowBeads/man/beads2.Rd flowBeads/man/cytocalmef.Rd flowBeads/man/dakomef.Rd flowBeads/man/flowBeads-package.Rd flowBeads/man/gateBeads-methods.Rd flowBeads/man/generateReport-methods.Rd flowBeads/man/getClusteringStats-methods.Rd flowBeads/man/getDate-methods.Rd flowBeads/man/getMEFparams-methods.Rd flowBeads/man/getMEFtransform-methods.Rd flowBeads/man/getParams-methods.Rd flowBeads/man/getTransformFunction-methods.Rd flowBeads/man/hasMEF-methods.Rd flowBeads/man/length-methods.Rd flowBeads/man/mefTransform.Rd flowBeads/man/plot-methods.Rd flowBeads/man/relativeNormalise-methods.Rd flowBeads/man/show-methods.Rd flowBeads/man/toMEF-methods.Rd
flowBeads/vignettes
flowBeads/vignettes/HowTo-flowBeads.Rnw
flowBeads/vignettes/HowTo-flowBeads.bbl
flowBeads/vignettes/beads.bib

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

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