flowBeads: flowBeads: Analysis of flow bead data
Version 1.14.0

This package extends flowCore to provide functionality specific to bead data. One of the goals of this package is to automate analysis of bead data for the purpose of normalisation.

AuthorNikolas Pontikos
Bioconductor views CellBasedAssays FlowCytometry Infrastructure
Date of publicationNone
MaintainerNikolas Pontikos <n.pontikos@gmail.com>
LicenseArtistic-2.0
Version1.14.0
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("flowBeads")

Getting started

Package overview
README.md

Popular man pages

BeadFlowFrame-class: BeadFlowFrame
cytocalmef: Cytocal config file
getMEFtransform-methods: getMEFtransform
getParams-methods: getParams
hasMEF-methods: hasMEF
show-methods: BeadFlowFrame
toMEF-methods: toMEF
See all...

All man pages Function index File listing

Man pages

absoluteNormalise-methods: absoluteNormalise
BeadFlowFrame-class: BeadFlowFrame
beads1: Dako beads on day 1
beads2: Dako beads on day 2
cytocalmef: Cytocal config file
dakomef: Dako config file
flowBeads-package: flowBeads
gateBeads-methods: gateBeads
GatedBeadFlowFrame-class: GatedBeadFlowFrame
generateReport-methods: generateReport
getClusteringStats-methods: getClusteringStats
getDate-methods: getDate
getMEFparams-methods: getMEFparams
getMEFtransform-methods: getMEFtransform
getParams-methods: getParams
getTransformFunction-methods: getTransformFunction
hasMEF-methods: hasMEF
length-methods: length
mefTransform: Logicle transformation constructor
plot-methods: Plot the results of the clustering. Plot only the requested...
relativeNormalise-methods: relativeNormalise
show-methods: BeadFlowFrame
toMEF-methods: toMEF

Functions

BeadFlowFrame Man page Source code
BeadFlowFrame-class Man page
GatedBeadFlowFrame Man page
GatedBeadFlowFrame-class Man page
absoluteNormalise Man page
absoluteNormalise,GatedBeadFlowFrame,data.frame-method Man page
beads1 Man page
beads2 Man page
cytocalmef Man page
dBeadFlowFrame Man page
dakomef Man page
flowBeads Man page
flowBeads-package Man page
gateBeads Man page
gateBeads,BeadFlowFrame-method Man page
gateScatter Source code
generateReport Man page
generateReport,GatedBeadFlowFrame,character-method Man page
getClusteringStats Man page
getClusteringStats,GatedBeadFlowFrame-method Man page
getDate Man page
getDate,flowFrame-method Man page
getMEFparams Man page
getMEFparams,BeadFlowFrame-method Man page
getMEFtransform Man page
getMEFtransform,GatedBeadFlowFrame-method Man page
getParams Man page
getParams,flowFrame-method Man page
getTransformFunction Man page
getTransformFunction,BeadFlowFrame-method Man page
hasMEF Man page
hasMEF,BeadFlowFrame,character-method Man page
length Man page
length,flowFrame-method Man page
mefTransform Man page Source code
plot Man page
plot,BeadFlowFrame,character-method Man page
plot,BeadFlowFrame,missing-method Man page
plot,GatedBeadFlowFrame,character-method Man page
relativeNormalise Man page
relativeNormalise,GatedBeadFlowFrame,GatedBeadFlowFrame-method Man page
show Man page
toMEF Man page
toMEF,GatedBeadFlowFrame,flowFrame-method Man page

Files

DESCRIPTION
NAMESPACE
R
R/AllClasses.R
R/AllGenerics.R
R/beads.R
R/beads1-data.R
R/beads2-data.R
R/cytocalmef-data.R
R/dakomef-data.R
R/flowBeads-package.R
R/get-methods.R
R/plot-methods.R
R/show-methods.R
README.md
build
build.R
build/vignette.rds
data
data/beads1.rda
data/beads2.rda
data/cytocalmef.csv.gz
data/dakomef.csv.gz
data/datalist
examples
examples/example.R
inst
inst/NEWS
inst/doc
inst/doc/HowTo-flowBeads.R
inst/doc/HowTo-flowBeads.Rnw
inst/doc/HowTo-flowBeads.pdf
inst/extdata
inst/extdata/beads1.fcs
inst/extdata/beads2.fcs
inst/extdata/cytocalmef.csv
inst/extdata/dakomef.csv
inst/markdownTemplates
inst/markdownTemplates/bead-report.Rmd
inst/markdownTemplates/bead-report.md
inst/markdownTemplates/bead-report2.Rmd
man
man/BeadFlowFrame-class.Rd
man/GatedBeadFlowFrame-class.Rd
man/absoluteNormalise-methods.Rd
man/beads1.Rd
man/beads2.Rd
man/cytocalmef.Rd
man/dakomef.Rd
man/flowBeads-package.Rd
man/gateBeads-methods.Rd
man/generateReport-methods.Rd
man/getClusteringStats-methods.Rd
man/getDate-methods.Rd
man/getMEFparams-methods.Rd
man/getMEFtransform-methods.Rd
man/getParams-methods.Rd
man/getTransformFunction-methods.Rd
man/hasMEF-methods.Rd
man/length-methods.Rd
man/mefTransform.Rd
man/plot-methods.Rd
man/relativeNormalise-methods.Rd
man/show-methods.Rd
man/toMEF-methods.Rd
vignettes
vignettes/HowTo-flowBeads.Rnw
vignettes/beads.bib
flowBeads documentation built on May 20, 2017, 10:46 p.m.

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