Software to combine flow cytometry data that has been multiplexed into multiple tubes with common markers between them, by establishing common bins across tubes in terms of the common markers, then determining expression within each tube for each bin in terms of the tube-specific markers.
|Date of publication||None|
|Maintainer||Kieran O'Neill <email@example.com>|
amlsample: Multitube AML sample as example data for flowBin
BinnedFlowSample: A 'FlowSample', but with binning information for each tube
checkQNorm: Function to check the quantile normalisation of a FlowSample...
eventsInBins: Count number of events for each tube in each bin
flowBin: function to run the entire flowBin pipeline
flowFPBin: Bin sample using flowFP binning
FlowSample: A class similar to flowSet, but with extra information needed...
getBinExpr: Calculate the expression of each bin in a BinnedFlowSample in...
kMeansBin: Bin sample using K-means binning
mapBinsKNN: Internal function to map bins by KNN
quantileNormalise: quantileNormalise normalise binning paramaters across all...
removeSparseBins: Remove bins from a BinnedFlowSample with few events in them
show-methods: Methods to view flowBin objects