getBinExpr: Calculate the expression of each bin in a BinnedFlowSample in...
In flowBin: Combining multitube flow cytometry data by binning

getBinExpr main function definition

`method`	Method to use to compute expression, passed as a string. Defaults to `medianFI`, which takes the simple median of each bin, and does not require control tubes. Other options available are `medianFIDist`, which uses medians with the median of the negative control subtracted out, and `propPos` which sets a threshold at the 98th percentile of the negative control and determines what proportion of cells lie above that.
`include.bin.medians`	logical, specifies whether to compute the medians of each bin in terms of the binning markers and include them in the result or not. Defaults to `T`.
`scale`	logical specifying whether to scale the results to the interval (0,1). If `T` (default), then all medians will be divided by the range for that marker as specified in the flowFrame.

A numeric matrix containing expression values, with bins as rows and markers as columns

data(amlsample)
normed.sample <- quantileNormalise(aml.sample)
binned.sample <- flowFPBin(normed.sample)
binned.sample <- removeSparseBins(binned.sample, 0.001)
bin.expr <- getBinExpr(binned.sample)
heatmap(bin.expr, scale='none')