flowFit: Estimate proliferation in cell-tracking dye studies

Share:

This package estimate the proliferation of a cell population in cell-tracking dye studies. The package uses an R implementation of the Levenberg-Marquardt algorithm (minpack.lm) to fit a set of peaks (corresponding to different generations of cells) over the proliferation-tracking dye distribution in a FACS experiment.

Author
Davide Rambaldi
Date of publication
None
Maintainer
Davide Rambaldi <davide.rambaldi@gmail.com>
License
Artistic-2.0
Version
1.12.0
URLs

View on Bioconductor

Man pages

flowFit-package
Estimate proliferation in cell-tracking dye studies
generationsDistance
Calculate the distance between 2 generations of cells on the...
getGenerations
Get percentage of cells for generation in a flowFit model
logTicks
Generate logTicks for FACS plotting
parentFitting
Fitting a parent population
parentFittingData-class
Class "parentFittingData"
plot-methods
Very basic plotting of flowFit objects:...
proliferationFitting
Estimate proliferation in cell-tracking dye studies
proliferationFittingData-class
Class "proliferationFittingData"
proliferationGrid
proliferationGrid function for plotting
proliferationIndex
proliferation index calculator

Files in this package

flowFit/DESCRIPTION
flowFit/NAMESPACE
flowFit/R
flowFit/R/AllClasses.R
flowFit/R/AllGenerics.R
flowFit/R/coef-methods.R
flowFit/R/confint-methods.R
flowFit/R/flowFit-internal.R
flowFit/R/generationsDistance.R
flowFit/R/getGenerations.R
flowFit/R/logTicks.R
flowFit/R/parentFitting.R
flowFit/R/plot-methods.R
flowFit/R/proliferationFitting.R
flowFit/R/proliferationGrid.R
flowFit/R/proliferationIndex.R
flowFit/R/show-methods.R
flowFit/R/summary-methods.R
flowFit/R/view-accessors.R
flowFit/build
flowFit/build/vignette.rds
flowFit/demo
flowFit/demo/00Index
flowFit/demo/proliferationFitting.R
flowFit/inst
flowFit/inst/CITATION
flowFit/inst/doc
flowFit/inst/doc/HowTo-flowFit.R
flowFit/inst/doc/HowTo-flowFit.Rnw
flowFit/inst/doc/HowTo-flowFit.pdf
flowFit/man
flowFit/man/flowFit-package.Rd
flowFit/man/generationsDistance.Rd
flowFit/man/getGenerations.Rd
flowFit/man/logTicks.Rd
flowFit/man/parentFitting.Rd
flowFit/man/parentFittingData-class.Rd
flowFit/man/plot-methods.Rd
flowFit/man/proliferationFitting.Rd
flowFit/man/proliferationFittingData-class.Rd
flowFit/man/proliferationGrid.Rd
flowFit/man/proliferationIndex.Rd
flowFit/vignettes
flowFit/vignettes/HowTo-flowFit.Rnw
flowFit/vignettes/cytoref.bib