This package estimate the proliferation of a cell population in cell-tracking dye studies. The package uses an R implementation of the Levenberg-Marquardt algorithm (minpack.lm) to fit a set of peaks (corresponding to different generations of cells) over the proliferation-tracking dye distribution in a FACS experiment.

Author | Davide Rambaldi |

Date of publication | None |

Maintainer | Davide Rambaldi <davide.rambaldi@gmail.com> |

License | Artistic-2.0 |

Version | 1.12.0 |

**flowFit-package:** Estimate proliferation in cell-tracking dye studies

**generationsDistance:** Calculate the distance between 2 generations of cells on the...

**getGenerations:** Get percentage of cells for generation in a flowFit model

**logTicks:** Generate logTicks for FACS plotting

**parentFitting:** Fitting a parent population

**parentFittingData-class:** Class "parentFittingData"

**plot-methods:** Very basic plotting of flowFit objects:...

**proliferationFitting:** Estimate proliferation in cell-tracking dye studies

**proliferationFittingData-class:** Class "proliferationFittingData"

**proliferationGrid:** proliferationGrid function for plotting

**proliferationIndex:** proliferation index calculator

flowFit/DESCRIPTION

flowFit/NAMESPACE

flowFit/R

flowFit/R/AllClasses.R
flowFit/R/AllGenerics.R
flowFit/R/coef-methods.R
flowFit/R/confint-methods.R
flowFit/R/flowFit-internal.R
flowFit/R/generationsDistance.R
flowFit/R/getGenerations.R
flowFit/R/logTicks.R
flowFit/R/parentFitting.R
flowFit/R/plot-methods.R
flowFit/R/proliferationFitting.R
flowFit/R/proliferationGrid.R
flowFit/R/proliferationIndex.R
flowFit/R/show-methods.R
flowFit/R/summary-methods.R
flowFit/R/view-accessors.R
flowFit/build

flowFit/build/vignette.rds

flowFit/demo

flowFit/demo/00Index

flowFit/demo/proliferationFitting.R

flowFit/inst

flowFit/inst/CITATION

flowFit/inst/doc

flowFit/inst/doc/HowTo-flowFit.R

flowFit/inst/doc/HowTo-flowFit.Rnw

flowFit/inst/doc/HowTo-flowFit.pdf

flowFit/man

flowFit/man/flowFit-package.Rd
flowFit/man/generationsDistance.Rd
flowFit/man/getGenerations.Rd
flowFit/man/logTicks.Rd
flowFit/man/parentFitting.Rd
flowFit/man/parentFittingData-class.Rd
flowFit/man/plot-methods.Rd
flowFit/man/proliferationFitting.Rd
flowFit/man/proliferationFittingData-class.Rd
flowFit/man/proliferationGrid.Rd
flowFit/man/proliferationIndex.Rd
flowFit/vignettes

flowFit/vignettes/HowTo-flowFit.Rnw

flowFit/vignettes/cytoref.bib

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