FlowRepositoryR: FlowRepository R Interface

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This package provides an interface to search and download data and annotations from FlowRepository (flowrepository.org). It uses the FlowRepository programming interface to communicate with a FlowRepository server.

Author
Josef Spidlen [aut, cre]
Date of publication
None
Maintainer
Josef Spidlen <jspidlen@bccrc.ca>
License
Artistic-2.0
Version
1.6.0

View on Bioconductor

Man pages

attachmentProxy-class
'attachmentProxy': a class representing a proxy to an...
download-methods
Download dataset files
fcsProxy-class
'fcsProxy': a class representing a proxy to an FCS file in...
fileProxy-class
'fileProxy': a class representing a proxy to a file in...
flowRepData-class
'flowRepData': a class for storing metadata about a...
flowRep.get
Retrieve information about a specified FlowRepository...
flowRep.ls
List identifiers of datasets available in FlowRepository
flowRepOrganization-class
'flowRepOrganization': a class for storing details about an...
FlowRepositoryR-package
Programming interface to access FlowRepository.org
flowRep.search
Search FlowRepository for datasets matching the query and...
flowRep.submitGeneStatus
Submit information about an IMPC gene analysis results to...
flowRep.submitImpcResults
Submit IMPC data analysis results to FlowRepository.
forgetFlowRepositoryCredentials
Forgets credentials (email and password) to login to...
getFlowRepositoryURL
Get FlowRepository URL addresss.
id-methods
Retrieve the identifier of flowRepData objects
ilarCodeDescription
Get the name of a lab from it's ILAR code
impcCodeDescription
Get a human readable description of an IMPC code.
impcResultsCopy-methods
Retrieve a copy of IMPC results associated with a flowRepData...
is.downloaded-methods
Check if a dataset or a file proxy is downloaded
listKnownIlarCodes
List all known ILAR codes.
setFlowRepositoryCredentials
Set credentials (email and password) to login to...
setFlowRepositoryURL
Set FlowRepository URL addresss.

Files in this package

FlowRepositoryR/DESCRIPTION
FlowRepositoryR/NAMESPACE
FlowRepositoryR/R
FlowRepositoryR/R/AllClasses.R
FlowRepositoryR/R/accessor-methods.R
FlowRepositoryR/R/exported-functions.R
FlowRepositoryR/R/helper-functions.R
FlowRepositoryR/R/methods.R
FlowRepositoryR/R/parsing-methods.R
FlowRepositoryR/R/settings.R
FlowRepositoryR/R/summary-methods.R
FlowRepositoryR/build
FlowRepositoryR/build/vignette.rds
FlowRepositoryR/inst
FlowRepositoryR/inst/NEWS
FlowRepositoryR/inst/doc
FlowRepositoryR/inst/doc/HowTo-FlowRepositoryR.R
FlowRepositoryR/inst/doc/HowTo-FlowRepositoryR.Rnw
FlowRepositoryR/inst/doc/HowTo-FlowRepositoryR.pdf
FlowRepositoryR/inst/unitTests
FlowRepositoryR/inst/unitTests/test_downloads.R
FlowRepositoryR/inst/unitTests/test_flowRep.get.R
FlowRepositoryR/inst/unitTests/test_flowRep.ls.R
FlowRepositoryR/inst/unitTests/test_flowRep.search.R
FlowRepositoryR/inst/unitTests/test_generics.R
FlowRepositoryR/inst/unitTests/test_helpers.R
FlowRepositoryR/inst/unitTests/test_impc_dict.R
FlowRepositoryR/inst/unitTests/test_settings.R
FlowRepositoryR/man
FlowRepositoryR/man/FlowRepositoryR-package.Rd
FlowRepositoryR/man/attachmentProxy-class.Rd
FlowRepositoryR/man/download-methods.Rd
FlowRepositoryR/man/fcsProxy-class.Rd
FlowRepositoryR/man/fileProxy-class.Rd
FlowRepositoryR/man/flowRep.get.Rd
FlowRepositoryR/man/flowRep.ls.Rd
FlowRepositoryR/man/flowRep.search.Rd
FlowRepositoryR/man/flowRep.submitGeneStatus.Rd
FlowRepositoryR/man/flowRep.submitImpcResults.Rd
FlowRepositoryR/man/flowRepData-class.Rd
FlowRepositoryR/man/flowRepOrganization-class.Rd
FlowRepositoryR/man/forgetFlowRepositoryCredentials.Rd
FlowRepositoryR/man/getFlowRepositoryURL.Rd
FlowRepositoryR/man/id-methods.Rd
FlowRepositoryR/man/ilarCodeDescription.Rd
FlowRepositoryR/man/impcCodeDescription.Rd
FlowRepositoryR/man/impcResultsCopy-methods.Rd
FlowRepositoryR/man/is.downloaded-methods.Rd
FlowRepositoryR/man/listKnownIlarCodes.Rd
FlowRepositoryR/man/setFlowRepositoryCredentials.Rd
FlowRepositoryR/man/setFlowRepositoryURL.Rd
FlowRepositoryR/tests
FlowRepositoryR/tests/runTests.R
FlowRepositoryR/vignettes
FlowRepositoryR/vignettes/FlowRepositorySetAPIpasswd.png
FlowRepositoryR/vignettes/HowTo-FlowRepositoryR.Rnw
FlowRepositoryR/vignettes/Refs.bib