impcCodeDescription: Get a human readable description of an IMPC code.

In FlowRepositoryR: FlowRepository R Interface

Description

This function returns a human readable description of an IMPC code based on https://www.mousephenotype.org/impress/protocol/174/7 as of November 6, 2015. This includes IMPC parameters as well as IMPC metadata.

Usage

    impcCodeDescription(code)

Arguments

code	Either a single IMPC code, or a list of IMPC codes, or a vector of IMPC codes. The code (or codes) will be looked in an internal database of IMPC codes. The codes are not case sensitive.

Details

IMPC parameter and metadata codes are stored in an internal database (environment serving as a hash table), which is used to lookup the results of this function. The codes are not case sensitive. The function can handle a single code as well as a list (or vector) of codes.

Value

An object of class character containing a human readable description of the IMPC code. If a list (or vector) of multiple codes is submitted, then a vector of multiple human readable descriptions will be returned. The length of the output will match the length of the input.

Author(s)

Josef Spidlen

References

Spidlen Josef. FlowRepository Resources for Developers.
http://flowrepository.org/developers

See Also

impcResultsCopy

Examples

    ## Checking IMPC dictionary
    ## codes are not case sensitive
    impcCodeDescription("impc_imm_010_001")
    impcCodeDescription("IMPC_IMM_013_001")
    impcCodeDescription("ImpC_iMm_019_001")
    impcCodeDescription(c("impc_imm_022_001", "IMPC_IMM_028_001"))

Example output

[1] "DP T cells"
[1] "DN NKT cells"
[1] "DN CD25- T cells"
[1] "CD8 CD25+ NKT cells"     "CD4 CD44+CD62L- T cells"

FlowRepositoryR documentation built on Nov. 8, 2020, 7:26 p.m.