flowType: Phenotyping Flow Cytometry Assays

Phenotyping Flow Cytometry Assays using multidimentional expansion of single dimentional partitions.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("flowType")
AuthorNima Aghaeepour, Kieran O'Neill, Adrin Jalali
Bioconductor views FlowCytometry
Date of publicationNone
MaintainerNima Aghaeepour <naghaeep@gmail.com>
LicenseArtistic-2.0
Version2.12.0

View on Bioconductor

Functions

calcMemUse Man page
calcNumPops Man page
decodePhenotype Man page
decodePhenotype,character, character,numeric-method Man page
decodePhenotype,character,character,numeric-method Man page
decodePhenotype-methods Man page
DLBCLExample Man page
encodePhenotype Man page
encodePhenotype,character,character-method Man page
encodePhenotype-methods Man page
flowType Man page
flowType-package Man page
getLabels Man page
HIVData Man page
HIVMetaData Man page
Phenotypes Man page
Phenotypes-class Man page
plot Man page
plot,Phenotypes,character Man page
plot,Phenotypes,character-method Man page
plot,Phenotypes,flowFrame Man page
plot,Phenotypes,flowFrame-method Man page
plot,Phenotypes,numeric Man page
plot,Phenotypes,numeric-method Man page
summary-methods Man page
summary,Phenotypes-method Man page

Files

DESCRIPTION
NAMESPACE
R
R/Phenotypes.R R/calcMemUse.R R/calcNumPop.R R/decodePhenotype.R R/encodePhenotype.R R/flowType.R R/getLabels.R R/getPopName.R
build
build/vignette.rds
data
data/DLBCLExample.rda
data/HIVData.rda
data/HIVMetaData.rda
inst
inst/NEWS
inst/doc
inst/doc/flowType.R
inst/doc/flowType.Rnw
inst/doc/flowType.pdf
man
man/DLBCLExample.Rd man/HIVData.Rd man/HIVMetaData.Rd man/Phenotypes.Rd man/calcMemUse.Rd man/calcNumPops.Rd man/decodePhenotype-methods.Rd man/encodePhenotype.Rd man/flowType-package.Rd man/flowType.Rd man/getLabels.Rd man/plot.Rd man/summary-methods.Rd
src
src/Makevars
src/Makevars.win
src/countsAndMeans.cpp
src/countsAndMeans.h
src/exceptions.h
src/flowType.cpp
src/flowType.h
src/numberGenerator.cpp
src/numberGenerator.h
vignettes
vignettes/flowType.Rnw
vignettes/flowType.bib

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