Phenotypes: Class '"Phenotypes"'

In flowType: Phenotyping Flow Cytometry Assays

Description

The return data from running flowType, containing counts

Objects from the Class

Objects can be created by calls of the form new("Phenotypes", ...).

Slots

CellFreqs:

Numeric vector containing counts of the number of cells belonging to each cell type.

MFIs:

Matrix of MFIs, with rows for cell types and columns for markers.

PhenoCodes:

Vector of character strings representing the codes of each cell type (phenotype).

PropMarkers:

Numeric vector specifying which markers were used for combinatorial gating.

MFIMarkers:

Numeric vector specifying for which markers MFIs were computed for each cell type.

MarkerNames:

A character vector of the names of all markers in the flowFrame given

Partitions:

The first level partitions that each cell in the flowFrame belong to in each channel.

MaxPopSize:

MaxMarkersPerPop

PartitionsPerMarker:

Vector of number of partitions used for each marker

Thresholds:

A list of vectors with the calculated thresholds for each marker (if a clustering algorithm was used) or the thresholds provided by the user.

See Also

flowType

Examples

showClass("Phenotypes")

flowType documentation built on April 28, 2020, 8:32 p.m.