flowQB: Automated Quadratic Characterization of Flow Cytometer Instrument Sensitivity: Q, B and CV instrinsic calculations

flowQB is a fully automated R Bioconductor package to calculate automatically the detector efficiency (Q), optical background (B) and intrinsic CV of the beads.

AuthorJosef Spidlen, Faysal El Khettabi, Wayne Moore, David Parks, Ryan Brinkman
Date of publicationNone
MaintainerJosef Spidlen <jspidlen@bccrc.ca>
LicenseArtistic-2.0
Version2.2.0

View on Bioconductor

Functions

calc_mean_sd_197 Man page
calc_mean_sd_background Man page
calc_mean_sd_capture Man page
calc_mean_sd_capture_all Man page
calc_mean_sd_duke Man page
find_peak Man page
fit_beads Man page
fit_led Man page
fit_spherotech Man page
fitted_ellipse_gate Man page
fitted_ellipse_gate,flowFrame,ANY-method Man page
fitted_ellipse_gate,flowFrame,fitted_ellipse_gate-method Man page
fitted_ellipse_gate,flowFrame-method Man page
fit_thermo_fisher Man page
get_results_for_dyes Man page
peak_gate Man page
peak_gate,flowFrame,ANY-method Man page
peak_gate,flowFrame-method Man page
peak_gate,flowFrame,peak_gate-method Man page
peak_gate,matrix,ANY-method Man page
peak_gate,matrix-method Man page
peak_gate,matrix,peak_gate-method Man page
pick_parameters Man page
pick_parameters,flowFrame,ANY-method Man page
pick_parameters,flowFrame-method Man page
pick_parameters,flowFrame,pick_parameters-method Man page
qb_from_fits Man page
split_in_two Man page
split_in_two,flowFrame,ANY-method Man page
split_in_two,flowFrame-method Man page
split_in_two,flowFrame,split_in_two-method Man page
split_in_two,matrix,ANY-method Man page
split_in_two,matrix-method Man page
split_in_two,matrix,split_in_two-method Man page

Files

flowQB/DESCRIPTION
flowQB/NAMESPACE
flowQB/R
flowQB/R/calc_mean_sd_functions.R flowQB/R/fit_functions.R flowQB/R/fitted_ellipse_gate.R flowQB/R/helper_functions.R flowQB/R/peak_gate.R flowQB/R/pick_parameters.R flowQB/R/split_in_two.R
flowQB/build
flowQB/build/vignette.rds
flowQB/inst
flowQB/inst/NEWS
flowQB/inst/doc
flowQB/inst/doc/flowQBVignettes.R
flowQB/inst/doc/flowQBVignettes.Rnw
flowQB/inst/doc/flowQBVignettes.pdf
flowQB/inst/extdata
flowQB/inst/extdata/readme.txt
flowQB/inst/unitTests
flowQB/inst/unitTests/test_calc_mean_sd_197.R
flowQB/inst/unitTests/test_calc_mean_sd_background.R
flowQB/inst/unitTests/test_calc_mean_sd_capture.R
flowQB/inst/unitTests/test_calc_mean_sd_duke.R
flowQB/inst/unitTests/test_find_peak.R
flowQB/inst/unitTests/test_fit_beads.R
flowQB/inst/unitTests/test_fit_led.R
flowQB/inst/unitTests/test_fitted_ellipse_gate.R
flowQB/inst/unitTests/test_helpers.R
flowQB/inst/unitTests/test_peak_gate.R
flowQB/inst/unitTests/test_pick_parameters.R
flowQB/inst/unitTests/test_split_in_two.R
flowQB/man
flowQB/man/calc_mean_sd_197.Rd flowQB/man/calc_mean_sd_background.Rd flowQB/man/calc_mean_sd_capture.Rd flowQB/man/calc_mean_sd_capture_all.Rd flowQB/man/calc_mean_sd_duke.Rd flowQB/man/find_peak.Rd flowQB/man/fit_beads.Rd flowQB/man/fit_led.Rd flowQB/man/fitted_ellipse_gate.Rd flowQB/man/get_results_for_dyes.Rd flowQB/man/peak_gate-methods.Rd flowQB/man/pick_parameters-methods.Rd flowQB/man/qb_from_fits.Rd flowQB/man/split_in_two-methods.Rd
flowQB/tests
flowQB/tests/runTests.R
flowQB/vignettes
flowQB/vignettes/Refs.bib
flowQB/vignettes/flowQBVignettes.Rnw
flowQB/vignettes/kmeans.png

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.