flowQB is a fully automated R Bioconductor package to calculate automatically the detector efficiency (Q), optical background (B) and intrinsic CV of the beads.

Author | Josef Spidlen, Faysal El Khettabi, Wayne Moore, David Parks, Ryan Brinkman |

Date of publication | None |

Maintainer | Josef Spidlen <jspidlen@bccrc.ca> |

License | Artistic-2.0 |

Version | 2.2.0 |

**calc_mean_sd_197:** Calculate the mean and the standard deviation of Standford's...

**calc_mean_sd_background:** Calculate the mean and the standard deviation.

**calc_mean_sd_capture:** Calculate the mean and the standard deviation for the stained...

**calc_mean_sd_capture_all:** Calculate the mean and the standard deviation for the stained...

**calc_mean_sd_duke:** Calculate the mean and the standard deviation of calibration...

**find_peak:** Find density peak in the provided vector of values

**fit_beads:** Fit multi-level bead data.

**fit_led:** Fit LED data.

**fitted_ellipse_gate:** Fit and apply an ellipse gate

**get_results_for_dyes:** Extract dye results from a data frame with detector results.

**peak_gate-methods:** Gate a 1D density peak in the provided object

**pick_parameters-methods:** Pick channel names

**qb_from_fits:** Extract Q, B and the intrinsic CV0 from fitting results

**split_in_two-methods:** Split an object in a low density region

calc_mean_sd_197 | Man page |

calc_mean_sd_background | Man page |

calc_mean_sd_capture | Man page |

calc_mean_sd_capture_all | Man page |

calc_mean_sd_duke | Man page |

find_peak | Man page |

fit_beads | Man page |

fit_led | Man page |

fit_spherotech | Man page |

fitted_ellipse_gate | Man page |

fitted_ellipse_gate,flowFrame,ANY-method | Man page |

fitted_ellipse_gate,flowFrame,fitted_ellipse_gate-method | Man page |

fitted_ellipse_gate,flowFrame-method | Man page |

fit_thermo_fisher | Man page |

get_results_for_dyes | Man page |

peak_gate | Man page |

peak_gate,flowFrame,ANY-method | Man page |

peak_gate,flowFrame-method | Man page |

peak_gate,flowFrame,peak_gate-method | Man page |

peak_gate,matrix,ANY-method | Man page |

peak_gate,matrix-method | Man page |

peak_gate,matrix,peak_gate-method | Man page |

pick_parameters | Man page |

pick_parameters,flowFrame,ANY-method | Man page |

pick_parameters,flowFrame-method | Man page |

pick_parameters,flowFrame,pick_parameters-method | Man page |

qb_from_fits | Man page |

split_in_two | Man page |

split_in_two,flowFrame,ANY-method | Man page |

split_in_two,flowFrame-method | Man page |

split_in_two,flowFrame,split_in_two-method | Man page |

split_in_two,matrix,ANY-method | Man page |

split_in_two,matrix-method | Man page |

split_in_two,matrix,split_in_two-method | Man page |

flowQB/DESCRIPTION

flowQB/NAMESPACE

flowQB/R

flowQB/R/calc_mean_sd_functions.R
flowQB/R/fit_functions.R
flowQB/R/fitted_ellipse_gate.R
flowQB/R/helper_functions.R
flowQB/R/peak_gate.R
flowQB/R/pick_parameters.R
flowQB/R/split_in_two.R
flowQB/build

flowQB/build/vignette.rds

flowQB/inst

flowQB/inst/NEWS

flowQB/inst/doc

flowQB/inst/doc/flowQBVignettes.R

flowQB/inst/doc/flowQBVignettes.Rnw

flowQB/inst/doc/flowQBVignettes.pdf

flowQB/inst/extdata

flowQB/inst/extdata/readme.txt

flowQB/inst/unitTests

flowQB/inst/unitTests/test_calc_mean_sd_197.R

flowQB/inst/unitTests/test_calc_mean_sd_background.R

flowQB/inst/unitTests/test_calc_mean_sd_capture.R

flowQB/inst/unitTests/test_calc_mean_sd_duke.R

flowQB/inst/unitTests/test_find_peak.R

flowQB/inst/unitTests/test_fit_beads.R

flowQB/inst/unitTests/test_fit_led.R

flowQB/inst/unitTests/test_fitted_ellipse_gate.R

flowQB/inst/unitTests/test_helpers.R

flowQB/inst/unitTests/test_peak_gate.R

flowQB/inst/unitTests/test_pick_parameters.R

flowQB/inst/unitTests/test_split_in_two.R

flowQB/man

flowQB/man/calc_mean_sd_197.Rd
flowQB/man/calc_mean_sd_background.Rd
flowQB/man/calc_mean_sd_capture.Rd
flowQB/man/calc_mean_sd_capture_all.Rd
flowQB/man/calc_mean_sd_duke.Rd
flowQB/man/find_peak.Rd
flowQB/man/fit_beads.Rd
flowQB/man/fit_led.Rd
flowQB/man/fitted_ellipse_gate.Rd
flowQB/man/get_results_for_dyes.Rd
flowQB/man/peak_gate-methods.Rd
flowQB/man/pick_parameters-methods.Rd
flowQB/man/qb_from_fits.Rd
flowQB/man/split_in_two-methods.Rd
flowQB/tests

flowQB/tests/runTests.R

flowQB/vignettes

flowQB/vignettes/Refs.bib

flowQB/vignettes/flowQBVignettes.Rnw

flowQB/vignettes/kmeans.png

Questions? Problems? Suggestions? Tweet to @rdrrHQ or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.