flowQB: Automated Quadratic Characterization of Flow Cytometer Instrument Sensitivity: Q, B and CV instrinsic calculations

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flowQB is a fully automated R Bioconductor package to calculate automatically the detector efficiency (Q), optical background (B) and intrinsic CV of the beads.

Author
Josef Spidlen, Faysal El Khettabi, Wayne Moore, David Parks, Ryan Brinkman
Date of publication
None
Maintainer
Josef Spidlen <jspidlen@bccrc.ca>
License
Artistic-2.0
Version
2.2.0

View on Bioconductor

Man pages

calc_mean_sd_197
Calculate the mean and the standard deviation of Standford's...
calc_mean_sd_background
Calculate the mean and the standard deviation.
calc_mean_sd_capture
Calculate the mean and the standard deviation for the stained...
calc_mean_sd_capture_all
Calculate the mean and the standard deviation for the stained...
calc_mean_sd_duke
Calculate the mean and the standard deviation of calibration...
find_peak
Find density peak in the provided vector of values
fit_beads
Fit multi-level bead data.
fit_led
Fit LED data.
fitted_ellipse_gate
Fit and apply an ellipse gate
get_results_for_dyes
Extract dye results from a data frame with detector results.
peak_gate-methods
Gate a 1D density peak in the provided object
pick_parameters-methods
Pick channel names
qb_from_fits
Extract Q, B and the intrinsic CV0 from fitting results
split_in_two-methods
Split an object in a low density region

Files in this package

flowQB/DESCRIPTION
flowQB/NAMESPACE
flowQB/R
flowQB/R/calc_mean_sd_functions.R
flowQB/R/fit_functions.R
flowQB/R/fitted_ellipse_gate.R
flowQB/R/helper_functions.R
flowQB/R/peak_gate.R
flowQB/R/pick_parameters.R
flowQB/R/split_in_two.R
flowQB/build
flowQB/build/vignette.rds
flowQB/inst
flowQB/inst/NEWS
flowQB/inst/doc
flowQB/inst/doc/flowQBVignettes.R
flowQB/inst/doc/flowQBVignettes.Rnw
flowQB/inst/doc/flowQBVignettes.pdf
flowQB/inst/extdata
flowQB/inst/extdata/readme.txt
flowQB/inst/unitTests
flowQB/inst/unitTests/test_calc_mean_sd_197.R
flowQB/inst/unitTests/test_calc_mean_sd_background.R
flowQB/inst/unitTests/test_calc_mean_sd_capture.R
flowQB/inst/unitTests/test_calc_mean_sd_duke.R
flowQB/inst/unitTests/test_find_peak.R
flowQB/inst/unitTests/test_fit_beads.R
flowQB/inst/unitTests/test_fit_led.R
flowQB/inst/unitTests/test_fitted_ellipse_gate.R
flowQB/inst/unitTests/test_helpers.R
flowQB/inst/unitTests/test_peak_gate.R
flowQB/inst/unitTests/test_pick_parameters.R
flowQB/inst/unitTests/test_split_in_two.R
flowQB/man
flowQB/man/calc_mean_sd_197.Rd
flowQB/man/calc_mean_sd_background.Rd
flowQB/man/calc_mean_sd_capture.Rd
flowQB/man/calc_mean_sd_capture_all.Rd
flowQB/man/calc_mean_sd_duke.Rd
flowQB/man/find_peak.Rd
flowQB/man/fit_beads.Rd
flowQB/man/fit_led.Rd
flowQB/man/fitted_ellipse_gate.Rd
flowQB/man/get_results_for_dyes.Rd
flowQB/man/peak_gate-methods.Rd
flowQB/man/pick_parameters-methods.Rd
flowQB/man/qb_from_fits.Rd
flowQB/man/split_in_two-methods.Rd
flowQB/tests
flowQB/tests/runTests.R
flowQB/vignettes
flowQB/vignettes/Refs.bib
flowQB/vignettes/flowQBVignettes.Rnw
flowQB/vignettes/kmeans.png