QUALIFIER: Quality Control of Gated Flow Cytometry Experiments

Share:

Provides quality control and quality assessment tools for gated flow cytometry data.

Author
Mike Jiang,Greg Finak,Raphael Gottardo
Date of publication
None
Maintainer
Mike Jiang <wjiang2@fhcrc.org>
License
Artistic-2.0
Version
1.18.0

View on Bioconductor

Man pages

getQAStats
Get statistics from gated data for QA check.
initDB
Initializes the data environment
ITNQASTUDY
The example QA data included in the package
outlierFunctions
outliers detection functions
plot-methods
plot the statistics for a particular cell population of a...
qaCheck-methods
Perform the quality assessment for the qaTask object
qaPreprocess
Preprocessing for QA check
qaReport
create quality assessment report
qaTask-class
a class for storing important information of flow cytometry...
QUALIFIER-package
QUALIFIER: A package that provides automated flow data...
read.qaTask
Loading 'qaTask's from a csv file
save_db
save/load the data environment to/from disk
saveToDB
Save the gating set and annotation data into the data...

Files in this package

QUALIFIER/DESCRIPTION
QUALIFIER/NAMESPACE
QUALIFIER/QUALIFIER_files
QUALIFIER/QUALIFIER_files/figure-html
QUALIFIER/QUALIFIER_files/figure-html/plot-BoundaryEvents-1.png
QUALIFIER/QUALIFIER_files/figure-html/plot-MNC-1.png
QUALIFIER/QUALIFIER_files/figure-html/plot-NumberOfEvents-1.png
QUALIFIER/QUALIFIER_files/figure-html/plot-RBCLysis-1.png
QUALIFIER/QUALIFIER_files/figure-html/plot-RBCLysis-subset-1.png
QUALIFIER/QUALIFIER_files/figure-html/plot-RedundantStain-1.png
QUALIFIER/QUALIFIER_files/figure-html/plot-spike-1.png
QUALIFIER/QUALIFIER_files/figure-html/qaCheck-MFIOverTime-1.png
QUALIFIER/R
QUALIFIER/R/AllClasses.R
QUALIFIER/R/AllFunctions.R
QUALIFIER/R/AllGenerics.R
QUALIFIER/R/addStats.R
QUALIFIER/R/data.R
QUALIFIER/R/getQAStats.R
QUALIFIER/R/outlier.R
QUALIFIER/R/qaCheck.R
QUALIFIER/R/qaPanelFunction.R
QUALIFIER/R/qaPlot.R
QUALIFIER/R/qaReport.R
QUALIFIER/R/qaTask-accessor-Methods.R
QUALIFIER/R/trellisPlot.R
QUALIFIER/R/utils.R
QUALIFIER/README.md
QUALIFIER/data
QUALIFIER/data/ITNQASTUDY.rda
QUALIFIER/data/qaCheckList.csv.gz
QUALIFIER/data/tubesevents.csv.gz
QUALIFIER/examples
QUALIFIER/examples/ITN.R
QUALIFIER/examples/Rd2roxygen.R
QUALIFIER/examples/example.R
QUALIFIER/examples/example2.R
QUALIFIER/examples/report-gen.R
QUALIFIER/inst
QUALIFIER/inst/NEWS
QUALIFIER/inst/doc
QUALIFIER/inst/htmlTemplates
QUALIFIER/inst/htmlTemplates/qaReport.css
QUALIFIER/inst/htmlTemplates/qaReport.js
QUALIFIER/inst/javascript
QUALIFIER/inst/javascript/highlight.js
QUALIFIER/inst/javascript/highlightBoxplot.js
QUALIFIER/inst/javascript/highlightFCS.js
QUALIFIER/man
QUALIFIER/man/ITNQASTUDY.Rd
QUALIFIER/man/QUALIFIER-package.Rd
QUALIFIER/man/getQAStats.Rd
QUALIFIER/man/initDB.Rd
QUALIFIER/man/outlierFunctions.Rd
QUALIFIER/man/plot-methods.Rd
QUALIFIER/man/qaCheck-methods.Rd
QUALIFIER/man/qaPreprocess.Rd
QUALIFIER/man/qaReport.Rd
QUALIFIER/man/qaTask-class.Rd
QUALIFIER/man/read.qaTask.Rd
QUALIFIER/man/saveToDB.Rd
QUALIFIER/man/save_db.Rd
QUALIFIER/vignettes
QUALIFIER/vignettes/QUALIFIER-plot-MNC-scatter.png
QUALIFIER/vignettes/QUALIFIER-plot-subset2.png
QUALIFIER/vignettes/QUALIFIER.Rmd