QUALIFIER: Quality Control of Gated Flow Cytometry Experiments

Provides quality control and quality assessment tools for gated flow cytometry data.

AuthorMike Jiang,Greg Finak,Raphael Gottardo
Date of publicationNone
MaintainerMike Jiang <wjiang2@fhcrc.org>
LicenseArtistic-2.0
Version1.18.0

View on Bioconductor

Functions

clearCheck Man page
db Man page
description,qaTask Man page
formula,qaTask Man page
getData,qaTask Man page
getName,qaTask Man page
getPop,qaTask Man page
getQAStats Man page
getQAStats,environment-method Man page
getQAStats,GatingHierarchy-method Man page
getQAStats,GatingSetList-method Man page
getQAStats,GatingSet-method Man page
getQAStats-methods Man page
highlight Man page
highlight<- Man page
highlight<-,qaTask,character-method Man page
highlight,qaTask-method Man page
htmlReport Man page
htmlReport<- Man page
htmlReport<-,qaTask,logical-method Man page
htmlReport,qaTask-method Man page
initDB Man page
ITNQASTUDY Man page
load_db Man page
outlier.cutoff Man page
outlierFunctions Man page
outlier.norm Man page
outlier.t Man page
plot Man page
plot-methods Man page
plot,qaTask,ANY-method Man page
plot,qaTask-method Man page
plotType,qaTask Man page
proportion.outliers.mle Man page
proportion.outliers.robust Man page
qaCheck Man page
qaCheckList Man page
qaCheck-methods Man page
qaCheck,qaTask-method Man page
qaID,qaTask Man page
qaLevel,qaTask Man page
qaPreprocess Man page
qaReport Man page
qaReport,list-method Man page
qaReport-methods Man page
qaReport,qaTask-method Man page
qaTask Man page
qaTask-class Man page
qoutlier Man page
qpar Man page
qpar<- Man page
qpar<-,qaTask,list-method Man page
qpar,qaTask-method Man page
QUALIFIER Man page
QUALIFIER-package Man page
queryStats Man page
queryStats,qaTask-method Man page
read.qaTask Man page
rFunc Man page
rFunc<- Man page
rFunc<-,qaTask,ANY-method Man page
rFunc<-,qaTask-method Man page
rFunc,qaTask-method Man page
rlm Man page
save_db Man page
saveToDB Man page
scatterPar Man page
scatterPar<- Man page
scatterPar<-,qaTask,list-method Man page
scatterPar,qaTask-method Man page
show,qaTask Man page
tubesevents Man page

Files

QUALIFIER/DESCRIPTION
QUALIFIER/NAMESPACE
QUALIFIER/QUALIFIER_files
QUALIFIER/QUALIFIER_files/figure-html
QUALIFIER/QUALIFIER_files/figure-html/plot-BoundaryEvents-1.png
QUALIFIER/QUALIFIER_files/figure-html/plot-MNC-1.png
QUALIFIER/QUALIFIER_files/figure-html/plot-NumberOfEvents-1.png
QUALIFIER/QUALIFIER_files/figure-html/plot-RBCLysis-1.png
QUALIFIER/QUALIFIER_files/figure-html/plot-RBCLysis-subset-1.png
QUALIFIER/QUALIFIER_files/figure-html/plot-RedundantStain-1.png
QUALIFIER/QUALIFIER_files/figure-html/plot-spike-1.png
QUALIFIER/QUALIFIER_files/figure-html/qaCheck-MFIOverTime-1.png
QUALIFIER/R
QUALIFIER/R/AllClasses.R QUALIFIER/R/AllFunctions.R QUALIFIER/R/AllGenerics.R QUALIFIER/R/addStats.R QUALIFIER/R/data.R QUALIFIER/R/getQAStats.R QUALIFIER/R/outlier.R QUALIFIER/R/qaCheck.R QUALIFIER/R/qaPanelFunction.R QUALIFIER/R/qaPlot.R QUALIFIER/R/qaReport.R QUALIFIER/R/qaTask-accessor-Methods.R QUALIFIER/R/trellisPlot.R QUALIFIER/R/utils.R
QUALIFIER/README.md
QUALIFIER/data
QUALIFIER/data/ITNQASTUDY.rda
QUALIFIER/data/qaCheckList.csv.gz
QUALIFIER/data/tubesevents.csv.gz
QUALIFIER/examples
QUALIFIER/examples/ITN.R
QUALIFIER/examples/Rd2roxygen.R
QUALIFIER/examples/example.R
QUALIFIER/examples/example2.R
QUALIFIER/examples/report-gen.R
QUALIFIER/inst
QUALIFIER/inst/NEWS
QUALIFIER/inst/doc
QUALIFIER/inst/htmlTemplates
QUALIFIER/inst/htmlTemplates/qaReport.css
QUALIFIER/inst/htmlTemplates/qaReport.js
QUALIFIER/inst/javascript
QUALIFIER/inst/javascript/highlight.js
QUALIFIER/inst/javascript/highlightBoxplot.js
QUALIFIER/inst/javascript/highlightFCS.js
QUALIFIER/man
QUALIFIER/man/ITNQASTUDY.Rd QUALIFIER/man/QUALIFIER-package.Rd QUALIFIER/man/getQAStats.Rd QUALIFIER/man/initDB.Rd QUALIFIER/man/outlierFunctions.Rd QUALIFIER/man/plot-methods.Rd QUALIFIER/man/qaCheck-methods.Rd QUALIFIER/man/qaPreprocess.Rd QUALIFIER/man/qaReport.Rd QUALIFIER/man/qaTask-class.Rd QUALIFIER/man/read.qaTask.Rd QUALIFIER/man/saveToDB.Rd QUALIFIER/man/save_db.Rd
QUALIFIER/vignettes
QUALIFIER/vignettes/QUALIFIER-plot-MNC-scatter.png
QUALIFIER/vignettes/QUALIFIER-plot-subset2.png
QUALIFIER/vignettes/QUALIFIER.Rmd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.