CytoML: GatingML interface for openCyto

This package is designed to use GatingML2.0 as the standard format to exchange the gated data with other software platform.

AuthorMike Jiang
Date of publicationNone
MaintainerMike Jiang <wjiang2@fhcrc.org>
LicenseArtistic-2.0
Version1.0.1

View on Bioconductor

Files in this package

CytoML/DESCRIPTION
CytoML/NAMESPACE
CytoML/R
CytoML/R/GatingSet2cytobank.R CytoML/R/GatingSet2flowJo.R CytoML/R/cytobank2GatingSet.R CytoML/R/flowUtils_functions.R CytoML/R/graphGML_methods.R CytoML/R/read.gatingML.cytobank.R CytoML/R/utils.R
CytoML/README.md
CytoML/build
CytoML/build/vignette.rds
CytoML/inst
CytoML/inst/NEWS
CytoML/inst/doc
CytoML/inst/doc/HowToExportGatingSet.R
CytoML/inst/doc/HowToExportGatingSet.Rmd
CytoML/inst/doc/HowToExportGatingSet.html
CytoML/inst/doc/HowToParseGatingML.R
CytoML/inst/doc/HowToParseGatingML.Rmd
CytoML/inst/doc/HowToParseGatingML.html
CytoML/inst/extdata
CytoML/inst/extdata/cytotrol_tcell_cytobank.xml
CytoML/inst/extdata/cytotrol_tcell_cytobank_counts.csv
CytoML/inst/tests
CytoML/man
CytoML/man/GatingSet2cytobank.Rd CytoML/man/GatingSet2flowJo.Rd CytoML/man/addCustomInfo.Rd CytoML/man/compare.counts.Rd CytoML/man/compensate-GatingSet-graphGML-method.Rd CytoML/man/constructTree.Rd CytoML/man/cytobank2GatingSet.Rd CytoML/man/extend.Rd CytoML/man/gating-methods.Rd CytoML/man/getChildren-graphGML-character-method.Rd CytoML/man/getCompensationMatrices-graphGML-method.Rd CytoML/man/getGate-graphGML-character-method.Rd CytoML/man/getNodes-graphGML-method.Rd CytoML/man/getParent-graphGML-character-method.Rd CytoML/man/getTransformations-graphGML-method.Rd CytoML/man/graphGML-class.Rd CytoML/man/matchPath.Rd CytoML/man/parse.gateInfo.Rd CytoML/man/plot-graphGML-missing-method.Rd CytoML/man/read.gatingML.cytobank.Rd CytoML/man/show-graphGML-method.Rd
CytoML/tests
CytoML/tests/testthat
CytoML/tests/testthat.R
CytoML/tests/testthat/Cytobank2GatingSet-InternalTestSuite.R
CytoML/tests/testthat/GatingSet2flowJo-InternalTestSuite.R
CytoML/tests/testthat/helper-lib.R
CytoML/tests/testthat/test-cytobank.R
CytoML/tests/testthat/test-extend.R
CytoML/tests/testthat/test-flowJo.R
CytoML/vignettes
CytoML/vignettes/HowToExportGatingSet.Rmd
CytoML/vignettes/HowToParseGatingML.Rmd
CytoML/vignettes/cytobank.png
CytoML/vignettes/flowJo.png

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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