CytoML: GatingML interface for openCyto

This package is designed to use GatingML2.0 as the standard format to exchange the gated data with other software platform.

AuthorMike Jiang
Date of publicationNone
MaintainerMike Jiang <wjiang2@fhcrc.org>
LicenseArtistic-2.0
Version1.0.1

View on Bioconductor

Functions

addCustomInfo Man page
compare.counts Man page
compensate,GatingSet,graphGML-method Man page
constructTree Man page
cytobank2GatingSet Man page
extend Man page
extend.ellipsoidGate Man page
extend.polygonGate Man page
extend.rectangleGate Man page
gating,graphGML,GatingSet-method Man page
GatingSet2cytobank Man page
GatingSet2flowJo Man page
getChildren,graphGML,character-method Man page
getCompensationMatrices,graphGML-method Man page
getGate,graphGML,character-method Man page
getNodes,graphGML-method Man page
getParent,graphGML,character-method Man page
getTransformations,graphGML-method Man page
graphGML-class Man page
matchPath Man page
parse.gateInfo Man page
plot,graphGML,missing-method Man page
read.gatingML.cytobank Man page
show,graphGML-method Man page

Files

CytoML/DESCRIPTION
CytoML/NAMESPACE
CytoML/R
CytoML/R/GatingSet2cytobank.R CytoML/R/GatingSet2flowJo.R CytoML/R/cytobank2GatingSet.R CytoML/R/flowUtils_functions.R CytoML/R/graphGML_methods.R CytoML/R/read.gatingML.cytobank.R CytoML/R/utils.R
CytoML/README.md
CytoML/build
CytoML/build/vignette.rds
CytoML/inst
CytoML/inst/NEWS
CytoML/inst/doc
CytoML/inst/doc/HowToExportGatingSet.R
CytoML/inst/doc/HowToExportGatingSet.Rmd
CytoML/inst/doc/HowToExportGatingSet.html
CytoML/inst/doc/HowToParseGatingML.R
CytoML/inst/doc/HowToParseGatingML.Rmd
CytoML/inst/doc/HowToParseGatingML.html
CytoML/inst/extdata
CytoML/inst/extdata/cytotrol_tcell_cytobank.xml
CytoML/inst/extdata/cytotrol_tcell_cytobank_counts.csv
CytoML/inst/tests
CytoML/man
CytoML/man/GatingSet2cytobank.Rd CytoML/man/GatingSet2flowJo.Rd CytoML/man/addCustomInfo.Rd CytoML/man/compare.counts.Rd CytoML/man/compensate-GatingSet-graphGML-method.Rd CytoML/man/constructTree.Rd CytoML/man/cytobank2GatingSet.Rd CytoML/man/extend.Rd CytoML/man/gating-methods.Rd CytoML/man/getChildren-graphGML-character-method.Rd CytoML/man/getCompensationMatrices-graphGML-method.Rd CytoML/man/getGate-graphGML-character-method.Rd CytoML/man/getNodes-graphGML-method.Rd CytoML/man/getParent-graphGML-character-method.Rd CytoML/man/getTransformations-graphGML-method.Rd CytoML/man/graphGML-class.Rd CytoML/man/matchPath.Rd CytoML/man/parse.gateInfo.Rd CytoML/man/plot-graphGML-missing-method.Rd CytoML/man/read.gatingML.cytobank.Rd CytoML/man/show-graphGML-method.Rd
CytoML/tests
CytoML/tests/testthat
CytoML/tests/testthat.R
CytoML/tests/testthat/Cytobank2GatingSet-InternalTestSuite.R
CytoML/tests/testthat/GatingSet2flowJo-InternalTestSuite.R
CytoML/tests/testthat/helper-lib.R
CytoML/tests/testthat/test-cytobank.R
CytoML/tests/testthat/test-extend.R
CytoML/tests/testthat/test-flowJo.R
CytoML/vignettes
CytoML/vignettes/HowToExportGatingSet.Rmd
CytoML/vignettes/HowToParseGatingML.Rmd
CytoML/vignettes/cytobank.png
CytoML/vignettes/flowJo.png

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.