This package is designed to use GatingML2.0 as the standard format to exchange the gated data with other software platform.
|Date of publication||None|
|Maintainer||Mike Jiang <firstname.lastname@example.org>|
addCustomInfo: add customInfo nodes to each gate node and add...
compare.counts: compare the counts to cytobank's exported csv so that the...
compensate-GatingSet-graphGML-method: compensate a GatingSet based on the compensation information...
constructTree: Reconstruct the population tree from the GateSets
cytobank2GatingSet: A wrapper that parse the gatingML and FCS files into...
extend: extend the gate to the minimum and maximum limit of both...
gating-methods: Apply the gatingML graph to a GatingSet
GatingSet2cytobank: Convert a GatingSet to a Cytobank-compatible gatingML
GatingSet2flowJo: Convert a GatingSet to flowJo workspace
getChildren-graphGML-character-method: get children nodes
getCompensationMatrices-graphGML-method: Extract compensation from graphGML object.
getGate-graphGML-character-method: get gate from the node
getNodes-graphGML-method: get nodes from graphGML object
getParent-graphGML-character-method: get parent nodes
getTransformations-graphGML-method: Extract transformations from graphGML object.
graphGML-class: A graph object returned by 'read.gatingML.cytobank' function.
matchPath: Given the leaf node, try to find out if a collection of nodes...
parse.gateInfo: Parse the cytobank custom_info for each gate
plot-graphGML-missing-method: plot the population tree stored in graphGML.
read.gatingML.cytobank: Parser for gatingML exported by Cytobank
show-graphGML-method: show method for graphGML