CytoML: GatingML interface for openCyto

This package is designed to use GatingML2.0 as the standard format to exchange the gated data with other software platform.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("CytoML")
AuthorMike Jiang
Bioconductor views DataImport DataRepresentation FlowCytometry
Date of publicationNone
MaintainerMike Jiang <wjiang2@fhcrc.org>
LicenseArtistic-2.0
Version1.0.1

View on Bioconductor

Functions

addCustomInfo Man page
compare.counts Man page
compensate,GatingSet,graphGML-method Man page
constructTree Man page
cytobank2GatingSet Man page
extend Man page
extend.ellipsoidGate Man page
extend.polygonGate Man page
extend.rectangleGate Man page
gating,graphGML,GatingSet-method Man page
GatingSet2cytobank Man page
GatingSet2flowJo Man page
getChildren,graphGML,character-method Man page
getCompensationMatrices,graphGML-method Man page
getGate,graphGML,character-method Man page
getNodes,graphGML-method Man page
getParent,graphGML,character-method Man page
getTransformations,graphGML-method Man page
graphGML-class Man page
matchPath Man page
parse.gateInfo Man page
plot,graphGML,missing-method Man page
read.gatingML.cytobank Man page
show,graphGML-method Man page

Files

DESCRIPTION
NAMESPACE
R
R/GatingSet2cytobank.R R/GatingSet2flowJo.R R/cytobank2GatingSet.R R/flowUtils_functions.R R/graphGML_methods.R R/read.gatingML.cytobank.R R/utils.R
README.md
build
build/vignette.rds
inst
inst/NEWS
inst/doc
inst/doc/HowToExportGatingSet.R
inst/doc/HowToExportGatingSet.Rmd
inst/doc/HowToExportGatingSet.html
inst/doc/HowToParseGatingML.R
inst/doc/HowToParseGatingML.Rmd
inst/doc/HowToParseGatingML.html
inst/extdata
inst/extdata/cytotrol_tcell_cytobank.xml
inst/extdata/cytotrol_tcell_cytobank_counts.csv
inst/tests
man
man/GatingSet2cytobank.Rd man/GatingSet2flowJo.Rd man/addCustomInfo.Rd man/compare.counts.Rd man/compensate-GatingSet-graphGML-method.Rd man/constructTree.Rd man/cytobank2GatingSet.Rd man/extend.Rd man/gating-methods.Rd man/getChildren-graphGML-character-method.Rd man/getCompensationMatrices-graphGML-method.Rd man/getGate-graphGML-character-method.Rd man/getNodes-graphGML-method.Rd man/getParent-graphGML-character-method.Rd man/getTransformations-graphGML-method.Rd man/graphGML-class.Rd man/matchPath.Rd man/parse.gateInfo.Rd man/plot-graphGML-missing-method.Rd man/read.gatingML.cytobank.Rd man/show-graphGML-method.Rd
tests
tests/testthat
tests/testthat.R tests/testthat/Cytobank2GatingSet-InternalTestSuite.R tests/testthat/GatingSet2flowJo-InternalTestSuite.R tests/testthat/helper-lib.R tests/testthat/test-cytobank.R tests/testthat/test-extend.R tests/testthat/test-flowJo.R
vignettes
vignettes/HowToExportGatingSet.Rmd
vignettes/HowToParseGatingML.Rmd
vignettes/cytobank.png
vignettes/flowJo.png

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.