Man pages for CytoML
A GatingML Interface for Cross Platform Cytometry Data Sharing

addCustomInfoadd customInfo nodes to each gate node and add...
ce_get_compensationsObtain the spillover matrices for the samples in a Cytobank...
ce_get_panelsObtain counts of the number of samples associated with each...
ce_get_samplesObtain a mapping between the samples and marker panels in a...
ce_get_transformationsObtain the transformations associated with each channel in a...
compensate-GatingSet-graphGML-methodcompensate a GatingSet based on the compensation information...
constructTreeReconstruct the population tree from the GateSets
cytobank_experiment-methodsMethods for interacting with cytobank_experiment objects
cytobank_to_gatingsetA wrapper that parses the gatingML and FCS files (or...
CytoML-deprecatedDeprecated functions in package 'CytoML'.
CytoML.par.getCytoML.par.set sets a set of parameters in the CytoML package...
CytoML.par.initworkspace version is parsed from xml node...
diva_get_samplesGet a table of samples from a FACSDiva workspace
diva_to_gatingsetParse a FACSDiva Workspace
diva_workspace-classAn R representation of a BD FACSDiva workspace
extendextend the gate to the minimum and maximum limit of both...
fj_ws_get_keywordsGet Keywords
fj_ws_get_sample_groupsGet a table of sample groups from a flowJo workspace
fj_ws_get_samplesGet a list of samples from a flowJo workspace
flowjo_to_gatingsetParse a flowJo Workspace
flowjo_workspace-classAn R representation of a flowJo workspace.
gatingset_to_cytobankConvert a GatingSet to a Cytobank-compatible gatingML
gatingset_to_flowjoConvert a GatingSet to flowJo workspace
getChildren-graphGML-character-methodget children nodes
getCompensationMatrices.graphGMLExtract compensation from graphGML object.
getGate-graphGML-character-methodget gate from the node
getNodes-graphGML-methodget nodes from graphGML object
getParent-graphGML-character-methodget parent nodes
getTransformations.graphGMLExtract transformations from graphGML object.
graphGML-classA graph object returned by 'read.gatingML.cytobank' function.
gs_compare_cytobank_countscompare the counts to cytobank's exported csv so that the...
matchPathGiven the leaf node, try to find out if a collection of nodes...
open_cytobank_experimentConstruct a 'cytobank_experiment' object from ACS file
open_diva_xmlopen Diva xml workspace
open_flowjo_xmlOpen/Close a flowJo workspace
parse.gateInfoParse the cytobank custom_info for each gate
plot-graphGML-missing-methodplot the population tree stored in graphGML.
range.GatingHierarchythe parameter range from the flow data associated with...
read.gatingML.cytobankParser for gatingML exported by Cytobank
show-graphGML-methodshow method for graphGML
CytoML documentation built on June 17, 2020, 2 a.m.