Man pages for CytoML
A GatingML Interface for Cross Platform Cytometry Data Sharing

addCustomInfoadd customInfo nodes to each gate node and add...
compare.countscompare the counts to cytobank's exported csv so that the...
compensate-GatingSet-graphGML-methodcompensate a GatingSet based on the compensation information...
constructTreeReconstruct the population tree from the GateSets
cytobank2GatingSetA wrapper that parse the gatingML and FCS files into...
divaWorkspace-classdivaWorkspace class Inherited from flowJoWorkspace-class
extendextend the gate to the minimum and maximum limit of both...
gating-methodsApply the gatingML graph to a GatingSet
GatingSet2cytobankConvert a GatingSet to a Cytobank-compatible gatingML
GatingSet2flowJoConvert a GatingSet to flowJo workspace
getChildren-graphGML-character-methodget children nodes
getCompensationMatrices-graphGML-methodExtract compensation from graphGML object.
getGate-graphGML-character-methodget gate from the node
getNodes-graphGML-methodget nodes from graphGML object
getParent-graphGML-character-methodget parent nodes
getTransformations-graphGML-methodExtract transformations from graphGML object.
graphGML-classA graph object returned by 'read.gatingML.cytobank' function.
matchPathGiven the leaf node, try to find out if a collection of nodes...
openDivaopen Diva xml workspace
parse.gateInfoParse the cytobank custom_info for each gate
plot-graphGML-missing-methodplot the population tree stored in graphGML.
range.GatingHierarchythe parameter range from the flow data associated with...
read.gatingML.cytobankParser for gatingML exported by Cytobank
show-graphGML-methodshow method for graphGML
CytoML documentation built on Jan. 5, 2019, 6:57 p.m.