flowQ: Quality control for flow cytometry

Provides quality control and quality assessment tools for flow cytometry data.

AuthorR. Gentleman, F. Hahne, J. Kettman, N. Le Meur, N. Gopalakrishnan
Date of publicationNone
MaintainerMike Jiang <wjiang2@fhcrc.org>
LicenseArtistic-2.0
Version1.34.0

View on Bioconductor

Man pages

aggregatorList-class: Class "aggregatorList"

binaryAggregator-class: Class "binaryAggregator"

discreteAggregator-class: Class "discreteAggregator"

evaluateProcess: Evaluate QA processes

factorAggregator-class: Class "factorAggregator"

flowQ-package: Quality control for flow cytometry

locateDuplicatedParameters: Locate Duplicated Parameters

normalizeSets: Locate Duplicated Parameters

numericAggregator-class: Class "numericAggregator"

outlier-class: Virtual Class "outlier"

outlierResult-class: Class "outlierResult"

outliers-methods: ~~ Methods for Function outliers in Package '.GlobalEnv' ~~

preProcessFlowList: Preprocess a list of flowSets to add empty flowFrames for...

qaAggregator-class: Abstraction of the possible outcomes of a QA process

qaGraph-class: Class "qaGraph"

qaGraphList-class: Class "qaGraphList"

qaProcess.2DStatsPlot: Creates a QA process for 2D summary statistic comparisons...

qaProcess.BoundaryPlot: Creates a QA process for comparison of the percentage of...

qaProcess.cellnumber: Create QA process of type 'cellnumber'

qaProcess-class: Abstraction of the results of a QA process

qaProcess.DensityPlot: Creates a QA process for comparisons of density plots across...

qaProcess.ECDFPlot: Creates a QA process for comparisons of ECDF's across...

qaProcessFrame-class: Class "qaProcessFrame"

qaProcess.KLDistPlot: Creates a QA process for comparisons of KL Distances across...

qaProcess.marginevents: Create QA process of type 'marginevents'

qaProcessSummary-class: Class "qaProcessSummary"

qaProcess.timeflow: Create QA process of type 'timeflow'

qaProcess.timeline: Create QA process of type 'timeline'

qaReport: Create HTML report using one or several QA process...

qData: Data for demonstrating QA processes that compares dye...

rangeAggregator-class: Class "rangeAggregator"

stringAggregator-class: Class "stringAggregator"

txtFormatQAObject: Formats results contained in QA process objects into a data...

validProcess: Validate a QAProcess object

writeQAReport: Create HTML report for (lists of) qaProcess objects

writeQATextReport: Create tab delimited text files for (lists of) qaProcess...

Files in this package

flowQ/.BBSoptions
flowQ/DESCRIPTION
flowQ/NAMESPACE
flowQ/R
flowQ/R/AllClasses.R flowQ/R/AllGenerics.R flowQ/R/aggregator-accessors.R flowQ/R/evaluateProcess.R flowQ/R/flowSet-methods.R flowQ/R/misc-methods.R flowQ/R/qaGraph-accessors.R flowQ/R/qaProcess-accessors.R flowQ/R/qaProcessFunctions.R flowQ/R/qaReport.R flowQ/R/zzz.R
flowQ/build
flowQ/build/vignette.rds
flowQ/data
flowQ/data/datalist
flowQ/data/qData.rda
flowQ/inst
flowQ/inst/doc
flowQ/inst/doc/DataQualityAssessment.R
flowQ/inst/doc/DataQualityAssessment.Rnw
flowQ/inst/doc/DataQualityAssessment.pdf
flowQ/inst/doc/Extending-flowQ.R
flowQ/inst/doc/Extending-flowQ.Rnw
flowQ/inst/doc/Extending-flowQ.pdf
flowQ/inst/htmlTemplates
flowQ/inst/htmlTemplates/bulbGreen.png
flowQ/inst/htmlTemplates/bulbRed.png
flowQ/inst/htmlTemplates/bulbYellow.png
flowQ/inst/htmlTemplates/qaReport.css
flowQ/inst/htmlTemplates/qaReport.js
flowQ/inst/htmlTemplates/scalelefteven.gif
flowQ/inst/htmlTemplates/scaleleftodd.gif
flowQ/inst/htmlTemplates/scalemiddleeven.gif
flowQ/inst/htmlTemplates/scalemiddleodd.gif
flowQ/inst/htmlTemplates/scalerighteven.gif
flowQ/inst/htmlTemplates/scalerightodd.gif
flowQ/inst/htmlTemplates/scalesingleeven.gif
flowQ/inst/htmlTemplates/scalesingleodd.gif
flowQ/man
flowQ/man/aggregatorList-class.Rd flowQ/man/binaryAggregator-class.Rd flowQ/man/discreteAggregator-class.Rd flowQ/man/evaluateProcess.Rd flowQ/man/factorAggregator-class.Rd flowQ/man/flowQ-package.Rd flowQ/man/locateDuplicatedParameters.Rd flowQ/man/normalizeSets.Rd flowQ/man/numericAggregator-class.Rd flowQ/man/outlier-class.Rd flowQ/man/outlierResult-class.Rd flowQ/man/outliers-methods.Rd flowQ/man/preProcessFlowList.Rd flowQ/man/qData.Rd flowQ/man/qaAggregator-class.Rd flowQ/man/qaGraph-class.Rd flowQ/man/qaGraphList-class.Rd flowQ/man/qaProcess-class.Rd flowQ/man/qaProcess.2DStatsPlot.Rd flowQ/man/qaProcess.BoundaryPlot.Rd flowQ/man/qaProcess.DensityPlot.Rd flowQ/man/qaProcess.ECDFPlot.Rd flowQ/man/qaProcess.KLDistPlot.Rd flowQ/man/qaProcess.cellnumber.Rd flowQ/man/qaProcess.marginevents.Rd flowQ/man/qaProcess.timeflow.Rd flowQ/man/qaProcess.timeline.Rd flowQ/man/qaProcessFrame-class.Rd flowQ/man/qaProcessSummary-class.Rd flowQ/man/qaReport.Rd flowQ/man/rangeAggregator-class.Rd flowQ/man/stringAggregator-class.Rd flowQ/man/txtFormatQAObject.Rd flowQ/man/validProcess.Rd flowQ/man/writeQAReport.Rd flowQ/man/writeQATextReport.Rd
flowQ/vignettes
flowQ/vignettes/DataQualityAssessment.Rnw
flowQ/vignettes/Extending-flowQ.Rnw
flowQ/vignettes/binary.jpg
flowQ/vignettes/cytoref.bib
flowQ/vignettes/discrete.jpg
flowQ/vignettes/factor.jpg
flowQ/vignettes/flowQStructure.pdf
flowQ/vignettes/images
flowQ/vignettes/images/bulbGreen.png
flowQ/vignettes/images/bulbRed.png
flowQ/vignettes/images/bulbYellow.png
flowQ/vignettes/images/qaReport.css
flowQ/vignettes/images/qaReport.js
flowQ/vignettes/numeric.jpg
flowQ/vignettes/range.jpg
flowQ/vignettes/stainInfo.pdf
flowQ/vignettes/string.jpg

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