flowMatch: Matching and meta-clustering in flow cytometry

Matching cell populations and building meta-clusters and templates from a collection of FC samples.

AuthorAriful Azad
Date of publicationNone
MaintainerAriful Azad <azad@lbl.gov>
LicenseArtistic-2.0
Version1.10.0

View on Bioconductor

Functions

Cluster Man page
Cluster-class Man page
ClusteredSample Man page
ClusteredSample-class Man page
ClusterMatch Man page
ClusterMatch-class Man page
create.template Man page
dist.cluster Man page
dist.matrix Man page
dist.sample Man page
dist.template Man page
flowMatch Man page
flowMatch-package Man page
get.center Man page
get.center,Cluster-method Man page
get.center,MetaCluster-method Man page
get.cluster.id Man page
get.cluster.id,Cluster-method Man page
get.clusters Man page
get.clusters,ClusteredSample-method Man page
get.clusters,MetaCluster-method Man page
get.cov Man page
get.cov,Cluster-method Man page
get.cov,MetaCluster-method Man page
get.dimension Man page
get.dimension,ClusteredSample-method Man page
get.dimension,Template-method Man page
get.labels Man page
get.labels,ClusteredSample-method Man page
get.match12 Man page
get.match12,ClusterMatch-method Man page
get.match21 Man page
get.match21,ClusterMatch-method Man page
get.matching.cost Man page
get.matching.cost,ClusterMatch-method Man page
get.metaClusters Man page
get.metaClusters,Template-method Man page
get.num.clusters Man page
get.num.clusters,ClusteredSample-method Man page
get.num.clusters,MetaCluster-method Man page
get.num.metaclusters Man page
get.num.metaclusters,Template-method Man page
get.sample.id Man page
get.sample.id,ClusteredSample-method Man page
get.sample.id,Cluster-method Man page
get.size Man page
get.size,ClusteredSample-method Man page
get.size,Cluster-method Man page
get.size,MetaCluster-method Man page
get.size,Template-method Man page
get.template.id Man page
get.template.id,Template-method Man page
get.tree Man page
get.tree,Template-method Man page
get.unmatch.penalty Man page
get.unmatch.penalty,ClusterMatch-method Man page
mahalanobis.dist Man page
match.clusters Man page
match.clusters.dist Man page
MetaCluster Man page
MetaCluster-class Man page
plot,ANY,ClusteredSample-method Man page
plot,flowFrame,ClusteredSample-method Man page
plot,MetaCluster-method Man page
plot,MetaCluster,missing-method Man page
plot,Template,ANY-method Man page
plot,Template-method Man page
plot,Template,missing-method Man page
sample.id<- Man page
sample.id<-,Cluster-method Man page
show,ClusteredSample-method Man page
show,ClusterMatch-method Man page
show,Cluster-method Man page
show,MetaCluster-method Man page
show,Template-method Man page
summary,ClusteredSample-method Man page
summary,ClusterMatch-method Man page
summary,Cluster-method Man page
summary,MetaCluster-method Man page
summary,Template-method Man page
symmetric.KL Man page
Template Man page
Template-class Man page
template.tree Man page
template.tree,Template-method Man page
template.tree,Template-method Man page

Files

flowMatch/DESCRIPTION
flowMatch/NAMESPACE
flowMatch/R
flowMatch/R/AllGenerics.R flowMatch/R/Cluster-class.R flowMatch/R/ClusterMatch-class.R flowMatch/R/ClusteredSample-class.R flowMatch/R/MetaCluster-class.R flowMatch/R/Template-class.R flowMatch/R/clusterDistances.R flowMatch/R/metaCluster.R flowMatch/R/plot.cluster.contours.R flowMatch/R/zzz.R
flowMatch/build
flowMatch/build/vignette.rds
flowMatch/inst
flowMatch/inst/doc
flowMatch/inst/doc/flowMatch.R
flowMatch/inst/doc/flowMatch.Rnw
flowMatch/inst/doc/flowMatch.pdf
flowMatch/man
flowMatch/man/Cluster-class.Rd flowMatch/man/ClusterMatch-class.Rd flowMatch/man/ClusteredSample-class.Rd flowMatch/man/MetaCluster-class.Rd flowMatch/man/Template-class.Rd flowMatch/man/create.template.Rd flowMatch/man/dist.cluster.Rd flowMatch/man/dist.matrix.Rd flowMatch/man/dist.sample.Rd flowMatch/man/dist.template.Rd flowMatch/man/flowMatch-package.Rd flowMatch/man/mahalanobis.dist.Rd flowMatch/man/match.clusters.Rd flowMatch/man/symmetric.KL.Rd flowMatch/man/template.tree.Rd
flowMatch/src
flowMatch/src/BipartiteGraph.cpp
flowMatch/src/BipartiteGraph.h
flowMatch/src/Makevars
flowMatch/src/Makevars.win
flowMatch/src/MinWghtEdgCoverBipartite.cpp
flowMatch/src/StackQueue.h
flowMatch/src/flowMatch.cpp
flowMatch/vignettes
flowMatch/vignettes/flowMatch.Rnw
flowMatch/vignettes/flowMatch.bib
flowMatch/vignettes/template_concepts.pdf
flowMatch/vignettes/template_example.pdf

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All documentation is copyright its authors; we didn't write any of that.