flowMatch: Matching and meta-clustering in flow cytometry

Matching cell populations and building meta-clusters and templates from a collection of FC samples.

Author
Ariful Azad
Date of publication
None
Maintainer
Ariful Azad <azad@lbl.gov>
License
Artistic-2.0
Version
1.10.0

View on Bioconductor

Man pages

Cluster-class
Cluster: A class representing a cell population in FC
ClusteredSample-class
ClusteredSample: A class representing a clustered FC Sample
ClusterMatch-class
ClusterMatch: A class representing matching of...
create.template
Creating a template of a collection of FC samples
dist.cluster
Dissimilarity between a pair of clusters
dist.matrix
Dissimilarity matrix between each pair of...
dist.sample
Dissimilarity between a pair of clustered FC samples
dist.template
Dissimilarity between a pair of FC templates
flowMatch-package
Matching cell populations and building meta-clusters and...
mahalanobis.dist
Mahanalobis Distance
match.clusters
Matching of clusters/meta-clusters across FC...
MetaCluster-class
MetaCluster: An S4 class representing a meta-cluster...
symmetric.KL
Symmetrized Kullback-Leibler divergence
Template-class
Template: An S4 class representing a template of a group of...
template.tree
Plot the hierarchy of samples established while creating a...

Files in this package

flowMatch/DESCRIPTION
flowMatch/NAMESPACE
flowMatch/R
flowMatch/R/AllGenerics.R
flowMatch/R/Cluster-class.R
flowMatch/R/ClusterMatch-class.R
flowMatch/R/ClusteredSample-class.R
flowMatch/R/MetaCluster-class.R
flowMatch/R/Template-class.R
flowMatch/R/clusterDistances.R
flowMatch/R/metaCluster.R
flowMatch/R/plot.cluster.contours.R
flowMatch/R/zzz.R
flowMatch/build
flowMatch/build/vignette.rds
flowMatch/inst
flowMatch/inst/doc
flowMatch/inst/doc/flowMatch.R
flowMatch/inst/doc/flowMatch.Rnw
flowMatch/inst/doc/flowMatch.pdf
flowMatch/man
flowMatch/man/Cluster-class.Rd
flowMatch/man/ClusterMatch-class.Rd
flowMatch/man/ClusteredSample-class.Rd
flowMatch/man/MetaCluster-class.Rd
flowMatch/man/Template-class.Rd
flowMatch/man/create.template.Rd
flowMatch/man/dist.cluster.Rd
flowMatch/man/dist.matrix.Rd
flowMatch/man/dist.sample.Rd
flowMatch/man/dist.template.Rd
flowMatch/man/flowMatch-package.Rd
flowMatch/man/mahalanobis.dist.Rd
flowMatch/man/match.clusters.Rd
flowMatch/man/symmetric.KL.Rd
flowMatch/man/template.tree.Rd
flowMatch/src
flowMatch/src/BipartiteGraph.cpp
flowMatch/src/BipartiteGraph.h
flowMatch/src/Makevars
flowMatch/src/Makevars.win
flowMatch/src/MinWghtEdgCoverBipartite.cpp
flowMatch/src/StackQueue.h
flowMatch/src/flowMatch.cpp
flowMatch/vignettes
flowMatch/vignettes/flowMatch.Rnw
flowMatch/vignettes/flowMatch.bib
flowMatch/vignettes/template_concepts.pdf
flowMatch/vignettes/template_example.pdf