COMPASS: Combinatorial Polyfunctionality Analysis of Single Cells
Version 1.14.0

COMPASS is a statistical framework that enables unbiased analysis of antigen-specific T-cell subsets. COMPASS uses a Bayesian hierarchical framework to model all observed cell-subsets and select the most likely to be antigen-specific while regularizing the small cell counts that often arise in multi-parameter space. The model provides a posterior probability of specificity for each cell subset and each sample, which can be used to profile a subject's immune response to external stimuli such as infection or vaccination.

Package details

AuthorLynn Lin, Kevin Ushey, Greg Finak, Ravio Kolde (pheatmap)
Bioconductor views FlowCytometry
MaintainerGreg Finak <>
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:

Try the COMPASS package in your browser

Any scripts or data that you put into this service are public.

COMPASS documentation built on May 31, 2017, 11:40 a.m.