Files in COMPASS

Combinatorial Polyfunctionality Analysis of Single Cells

README.md

NEWS

NAMESPACE

DESCRIPTION

cleanup

build/vignette.rds

src/COMPASS_init.c

src/melt_matrix.c

src/samplePuPs.cpp

src/CellCounts.cpp

src/Makevars.win

src/RcppExports.cpp

src/melt_dataframe.c

src/digamma.c

src/updategammak_noPu.cpp

src/updatealphau_noPu_Exp.cpp

src/utils.c

src/Makevars

src/CellCounts_character.cpp

src/transpose_list.c

src/updatebeta_RW.cpp

src/updatealphau.cpp

src/updatealphas_Exp.cpp

src/mat2vec.c

data/COMPASS.rda

R/transpose_list.R R/check_meta.R R/swap.R R/plotMeanGamma-2.R R/COMPASSResult-methods.R R/Response.R R/RcppExports.R R/utils.R R/shinyCOMPASS.R R/Posterior.R R/TotalCounts.R R/merge-COMPASSContainer.R R/melt_.R R/GetThresholdedIntensities.R R/shinyCOMPASSDeps.R R/Combinations.R R/pheatmap.R R/COMPASS.R R/cleanup.R R/description.R R/COMPASS-package.R R/zzz.R R/subset-COMPASSContainer.R R/UniqueCombinations.R R/COMPASS-discrete.R R/GatingSetToCOMPASS.R R/miscellaneous.R R/CellCounts.R R/SimpleCOMPASS.R R/plotMeanGamma.R R/plotMeanGammaMulti.R R/Rhat.R R/Scores.R R/commonPlot.R R/COMPASSContainer.R R/COMPASS-data.R

vignettes/bibliography.bib

vignettes/SimpleCOMPASS.Rmd

vignettes/SimpleCOMPASS.html

vignettes/COMPASS.Rmd man/COMPASSResult-accessors.Rd man/SimpleCOMPASS.Rd man/merge.COMPASSContainer.Rd man/COMPASS-package.Rd man/markers.Rd man/COMPASSContainer.Rd man/scores.Rd man/pheatmap.Rd man/GetThresholdedIntensities.Rd man/PolyfunctionalityScore.Rd man/checkCOMPASSConvergence.Rd man/select_compass_pops.Rd man/COMPASSDescription.Rd man/subset.COMPASSContainer.Rd man/COMPASS.Rd man/COMPASSfitToCountsTable.Rd man/plot2.Rd man/transpose_list.Rd man/getCounts.Rd man/COMPASSMCMCDiagnosis.Rd man/print.COMPASSResult.Rd man/Combinations.Rd man/CellCounts.Rd man/UniqueCombinations.Rd man/translate_marker_names.Rd man/FunctionalityScore.Rd man/print.COMPASSContainer.Rd man/COMPASSContainerFromGatingSet.Rd man/Response.Rd man/plot.COMPASSResult.Rd man/shinyCOMPASSDeps.Rd man/Posterior.Rd man/shinyCOMPASS.Rd man/metadata.Rd man/melt_.Rd man/COMPASSContainer-data.Rd man/COMPASSResult-data.Rd man/summary.COMPASSResult.Rd man/TotalCellCounts.Rd man/plotCOMPASSResultStack.Rd man/categories.Rd man/summary.COMPASSContainer.Rd tests/test-all.R tests/testthat/test-GatingSet2COMPASS.R tests/testthat/test-FunctionalityScore.R tests/testthat/test-CellCounts.R tests/testthat/helper-init.R tests/testthat/test-COMPASSPlot.R tests/testthat/test-COMPASS.R inst/doc/SimpleCOMPASS.pdf inst/doc/SimpleCOMPASS.Rmd inst/doc/COMPASS.R

inst/doc/COMPASS.html

inst/doc/SimpleCOMPASS.R inst/doc/COMPASS.Rmd inst/shiny/withHelp.R inst/shiny/ui.R

inst/shiny/scripts.js

inst/shiny/server.R inst/shiny/common_functions.R

inst/shiny/www/js/updateSubsets.js

inst/shiny/www/js/shinySplom.js

inst/shiny/www/js/gridsterExtras.js

inst/shiny/www/js/fancyboxify.js

inst/shiny/www/js/d3.js

inst/shiny/www/js/tooltips.js

inst/shiny/www/js/resize.js

inst/shiny/www/multiselect/multiselect.js

inst/shiny/www/multiselect/multiselect.css

inst/shiny/www/jquery-ui/js/jquery-1.9.1.js

inst/shiny/www/jquery-ui/js/jquery-ui-1.10.3.custom.min.js

inst/shiny/www/jquery-ui/js/jquery-ui-1.10.3.custom.js

inst/shiny/www/jquery-ui/css/ui-lightness/jquery-ui-1.10.3.custom.css

inst/shiny/www/jquery-ui/css/ui-lightness/jquery-ui-1.10.3.custom.min.css

inst/shiny/www/jquery-ui/css/ui-lightness/images/ui-icons_ffffff_256x240.png

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inst/shiny/www/jquery-ui/css/ui-lightness/images/ui-bg_diagonals-thick_18_b81900_40x40.png

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inst/shiny/www/jquery-ui/css/ui-lightness/images/ui-bg_gloss-wave_35_f6a828_500x100.png

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inst/shiny/www/jquery-ui/css/ui-lightness/images/ui-bg_flat_10_000000_40x100.png

inst/shiny/www/jquery-ui/css/ui-lightness/images/ui-icons_228ef1_256x240.png

inst/shiny/www/jquery-ui/css/ui-lightness/images/animated-overlay.gif

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inst/shiny/www/jquery-ui/css/ui-lightness/images/ui-bg_highlight-soft_75_ffe45c_1x100.png

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inst/shiny/www/jquery-ui/css/ui-lightness/images/ui-bg_diagonals-thick_20_666666_40x40.png

inst/shiny/www/opentip/opentip.css

inst/shiny/www/opentip/opentip.js

inst/shiny/www/css/styles.css

inst/shiny/www/css/shinySplom.css

inst/extdata/SimpleCOMPASSExample.xlsx

inst/extdata/SimpleCOMPASSExamples.csv

COMPASS documentation built on Nov. 8, 2020, 8:05 p.m.