Description Usage Arguments Value Note Examples

Computes the functionality score for each observation from the gamma matrix
of a COMPASS model fit. The scores are normalized according to the total
number of possible subsets that could be observed (`2^M - 1`

).

1 2 3 4 5 6 7 | ```
FunctionalityScore(x, n, markers = NULL)
## S3 method for class 'COMPASSResult'
FunctionalityScore(x, n, markers = NULL)
## Default S3 method:
FunctionalityScore(x, n, markers = NULL)
``` |

`x` |
An object of class |

`n` |
The number of markers included in an experiment. It is inferred
from the data when |

`markers` |
The set of markers for which to compute a Functionality score. By default uses all markers. Must match names returned by |

A numeric vector of functionality scores.

The null category is implicitly dropped when computing the functionality
score for a `COMPASS`

result; this is not true for the regular matrix
method.

1 |

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