API for COMPASS
Combinatorial Polyfunctionality Analysis of Single Cells

Global functions
CC Man page
COMPASS Man page Source code
COMPASS-package Man page
COMPASS.discrete Source code
COMPASSContainer Man page Source code
COMPASSContainer-data Man page
COMPASSContainerFromGatingSet Man page Source code
COMPASSDescription Man page Source code
COMPASSDescription<- Man page
COMPASSResult-accessors Man page
COMPASSResult-data Man page
CR Man page
CellCounts Man page Source code
CellCounts.COMPASSContainer Source code
CellCounts.default Source code
CellCounts_character Source code
CellCounts_numeric Source code
Combinations Man page Source code
FunctionalityScore Man page Source code
FunctionalityScore.COMPASSResult Man page Source code
FunctionalityScore.default Man page Source code
Gamma Man page Source code
GetThresholdedIntensities Man page Source code
MakeComparable Source code
MakeComparableTwoCOMPASSResults Source code
MeanGamma Man page Source code
PolyfunctionalityScore Man page Source code
PolyfunctionalityScore.COMPASSResult Man page Source code
PolyfunctionalityScore.default Man page Source code
Posterior Man page Source code
PosteriorDiff Man page Source code
PosteriorLogDiff Man page Source code
PosteriorPs Man page Source code
PosteriorPu Man page Source code
SimpleCOMPASS Man page Source code
TotalCellCounts Man page Source code
UniqueCombinations Man page Source code
UniqueCombinations.COMPASSContainer Man page Source code
UniqueCombinations.default Man page Source code
categories Man page Source code
check_meta Source code
clamp Source code
cleanup Source code
cluster_mat Source code
compute_posterior Source code
convert_annotations Source code
convert_cytokine_annotations Source code
draw_annotation_legend Source code
draw_annotations Source code
draw_colnames Source code
draw_dendrogram Source code
draw_headerplot Source code
draw_legend Source code
draw_main Source code
draw_matrix Source code
draw_polar_legend Source code
draw_row_annotations Source code
draw_rownames Source code
generate_annotation_colours Source code
generate_breaks Source code
generate_row_annotation_colours Source code
getCounts Man page Source code
heatmap_motor Source code
kmeans_pheatmap Source code
lo Source code
markers Man page Source code
markers.COMPASSContainer Source code
markers.COMPASSResult Source code
melt_ Man page Source code
melt_.data.frame Man page Source code
melt_.matrix Man page Source code
merge.COMPASSContainer Man page Source code
metadata Man page Source code
metadata.COMPASSContainer Man page Source code
metadata.COMPASSResult Man page Source code
metadata<- Man page
metadata<-.COMPASSContainer Man page
needsFlowWorkspace Source code
onLoad Source code
pheatmap Man page Source code
plot Man page
plot.COMPASSResult Man page Source code
plot2 Man page Source code
polarLegend Source code
print.COMPASSContainer Man page Source code
print.COMPASSResult Man page Source code
sBoolGate Source code
scale_colours Source code
scale_mat Source code
scale_rows Source code
scale_vec_colours Source code
scores Man page Source code
select_compass_pops Man page Source code
shinyCOMPASS Man page Source code
shinyCOMPASSDeps Man page Source code
stopf Source code
subset.COMPASSContainer Man page Source code
summary.COMPASSContainer Man page Source code
summary.COMPASSResult Man page Source code
swap Source code
toCart Source code
translate_marker_names Man page Source code
transpose_list Man page Source code
vplayout Source code
warnf Source code
COMPASS documentation built on May 31, 2017, 11:40 a.m.