scores: Fetch the table of scores and metadata from a COMPASSResult...

In COMPASS: Combinatorial Polyfunctionality Analysis of Single Cells

Description

This function extracts the functionality and polyfunctionality scores from a COMPASS result merged with the sample metadata table, accounting for any dropped samples due to filtering.

Usage

scores(x, markers = NULL)

Arguments

x	A COMPASSResult object.
markers	A character vector of markers for which to compute the scores. Defaults to all markers. Must match the names returned by markers().

Examples

scores(CR)

Example output

     iid         FS        PFS
1: iid_1 0.05100000 0.10927778
2: iid_2 0.02771429 0.01077778
3: iid_3 0.42857143 0.16666667
4: iid_4 0.35714286 0.13888889
5: iid_5 0.28014286 0.10894444

COMPASS documentation built on Nov. 8, 2020, 8:05 p.m.