flowVS: Variance stabilization in flow cytometry (and microarrays)
Version 1.8.0

Per-channel variance stabilization from a collection of flow cytometry samples by Bertlett test for homogeneity of variances. The approach is applicable to microarrays data as well.

Browse man pages Browse package API and functions Browse package files

AuthorAriful Azad
Bioconductor views CellBasedAssays FlowCytometry Microarray
Date of publicationNone
MaintainerAriful Azad <azadcse@gmail.com>
LicenseArtistic-2.0
Version1.8.0
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("flowVS")

Man pages

estParamFlowVS: Estimate optimum parameters for per-channel within-population...
flowVS-package: flowVS: Variance stabilization in flow cytometry (and...
HD: Sample flow cytometry data from healthy individuals
lymphs: Identify lymphocyte cells from a flow cytometry sample.
microVS: Variance stabilization for microarray data.
plotMeanSd: Plot row standard deviations versus row means (modified from...
transFlowVS: Transform a flowSet by asinh transformation.

Functions

HD Man page
bartlettTest Source code
bartlettTestMicro Source code
checkClass Source code
curvPeaks Source code
densityPeaks Source code
estParamFlowVS Man page Source code
flowVS Man page
flowVS-package Man page
flowVS1D Source code
lymphs Man page Source code
microVS Man page Source code
optimStat Source code
peakStats1D Source code
plotMeanSd Man page Source code
transFlowVS Man page Source code

Files

DESCRIPTION
NAMESPACE
R
R/cluster1d.R
R/flowVS.R
R/lymphs.R
R/microVS.R
build
build/vignette.rds
data
data/HD.RData
data/datalist
inst
inst/doc
inst/doc/flowVS.R
inst/doc/flowVS.Rnw
inst/doc/flowVS.pdf
man
man/HD.Rd
man/estParamFlowVS.Rd
man/flowVS-package.Rd
man/lymphs.Rd
man/microVS.Rd
man/plotMeanSd.Rd
man/transFlowVS.Rd
vignettes
vignettes/figure
vignettes/figure/HD-1.pdf
vignettes/figure/HD-2.pdf
vignettes/figure/ITN-1.pdf
vignettes/figure/ITN-2.pdf
vignettes/figure/densityHD-1.pdf
vignettes/figure/densityITN-1.pdf
vignettes/figure/microVS-1.pdf
vignettes/figure/vsn-1.pdf
vignettes/figure/vsn-2.pdf
vignettes/flowVS.Rnw
vignettes/flowVS.bib
flowVS documentation built on May 20, 2017, 10:44 p.m.