flowVS: Variance stabilization in flow cytometry (and microarrays)

Per-channel variance stabilization from a collection of flow cytometry samples by Bertlett test for homogeneity of variances. The approach is applicable to microarrays data as well.

Author
Ariful Azad
Date of publication
None
Maintainer
Ariful Azad <azadcse@gmail.com>
License
Artistic-2.0
Version
1.6.0

View on Bioconductor

Man pages

estParamFlowVS
Estimate optimum parameters for per-channel within-population...
flowVS-package
flowVS: Variance stabilization in flow cytometry (and...
HD
Sample flow cytometry data from healthy individuals
lymphs
Identify lymphocyte cells from a flow cytometry sample.
microVS
Variance stabilization for microarray data.
plotMeanSd
Plot row standard deviations versus row means (modified from...
transFlowVS
Transform a flowSet by asinh transformation.

Files in this package

flowVS/DESCRIPTION
flowVS/NAMESPACE
flowVS/R
flowVS/R/cluster1d.R
flowVS/R/flowVS.R
flowVS/R/lymphs.R
flowVS/R/microVS.R
flowVS/build
flowVS/build/vignette.rds
flowVS/data
flowVS/data/HD.RData
flowVS/data/datalist
flowVS/inst
flowVS/inst/doc
flowVS/inst/doc/flowVS.R
flowVS/inst/doc/flowVS.Rnw
flowVS/inst/doc/flowVS.pdf
flowVS/man
flowVS/man/HD.Rd
flowVS/man/estParamFlowVS.Rd
flowVS/man/flowVS-package.Rd
flowVS/man/lymphs.Rd
flowVS/man/microVS.Rd
flowVS/man/plotMeanSd.Rd
flowVS/man/transFlowVS.Rd
flowVS/vignettes
flowVS/vignettes/figure
flowVS/vignettes/figure/HD-1.pdf
flowVS/vignettes/figure/HD-2.pdf
flowVS/vignettes/figure/ITN-1.pdf
flowVS/vignettes/figure/ITN-2.pdf
flowVS/vignettes/figure/densityHD-1.pdf
flowVS/vignettes/figure/densityITN-1.pdf
flowVS/vignettes/figure/microVS-1.pdf
flowVS/vignettes/figure/vsn-1.pdf
flowVS/vignettes/figure/vsn-2.pdf
flowVS/vignettes/flowVS-concordance.tex
flowVS/vignettes/flowVS.Rnw
flowVS/vignettes/flowVS.bib