flowMap: Mapping cell populations in flow cytometry data for cross-sample comparisons using the Friedman-Rafsky Test

flowMap quantifies the similarity of cell populations across multiple flow cytometry samples using a nonparametric multivariate statistical test. The method is able to map cell populations of different size, shape, and proportion across multiple flow cytometry samples. The algorithm can be incorporate in any flow cytometry work flow that requires accurat quantification of similarity between cell populations.

Author
Chiaowen Joyce Hsiao, Yu Qian, and Richard H. Scheuermann
Date of publication
None
Maintainer
Chiaowen Joyce Hsiao <joyce.hsiao1@gmail.com>
License
GPL (>=2)
Version
1.12.0

View on Bioconductor

Man pages

flowMap-package
Flow cytometry data cross-sample comparison
frstats-class
FR statistics and p-values generated from one single draw of...
getFR
FR test for a single cell population pair comparison
getFRest
FR tests to compare two flow cytometry samples
getFRmat
FR tests to compare two flow cytometry samples
makeDistmat
Generate a similarity matrix quantifying similarity between...
statCrossLists
summary statistic across elements of lists

Files in this package

flowMap/DESCRIPTION
flowMap/NAMESPACE
flowMap/NEWS
flowMap/R
flowMap/R/classes_and_methods.r
flowMap/R/flowMap-package.r
flowMap/R/getFR.r
flowMap/R/getFRest.r
flowMap/R/getFRmat.r
flowMap/R/makeDistmat.r
flowMap/R/makeFRMST.r
flowMap/R/statCrossLists.r
flowMap/R/utils.R
flowMap/README.md
flowMap/build
flowMap/build/vignette.rds
flowMap/inst
flowMap/inst/doc
flowMap/inst/doc/flowMap.R
flowMap/inst/doc/flowMap.Rnw
flowMap/inst/doc/flowMap.pdf
flowMap/inst/extdata
flowMap/inst/extdata/refData
flowMap/inst/extdata/refData/sample1.txt
flowMap/inst/extdata/sample.txt
flowMap/inst/extdata/sample1.txt
flowMap/inst/extdata/sample2.txt
flowMap/man
flowMap/man/flowMap-package.Rd
flowMap/man/frstats-class.Rd
flowMap/man/getFR.Rd
flowMap/man/getFRest.Rd
flowMap/man/getFRmat.Rd
flowMap/man/makeDistmat.Rd
flowMap/man/statCrossLists.Rd
flowMap/vignettes
flowMap/vignettes/flowMap-concordance.tex
flowMap/vignettes/flowMap.Rnw
flowMap/vignettes/flowMap.bib