flowMap: Mapping cell populations in flow cytometry data for cross-sample comparisons using the Friedman-Rafsky Test
Version 1.14.0

flowMap quantifies the similarity of cell populations across multiple flow cytometry samples using a nonparametric multivariate statistical test. The method is able to map cell populations of different size, shape, and proportion across multiple flow cytometry samples. The algorithm can be incorporate in any flow cytometry work flow that requires accurat quantification of similarity between cell populations.

AuthorChiaowen Joyce Hsiao, Yu Qian, and Richard H. Scheuermann
Bioconductor views FlowCytometry MultipleComparison
Date of publicationNone
MaintainerChiaowen Joyce Hsiao <joyce.hsiao1@gmail.com>
LicenseGPL (>=2)
Version1.14.0
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("flowMap")

Getting started

Package overview
README.md

Popular man pages

flowMap-package: Flow cytometry data cross-sample comparison
frstats-class: FR statistics and p-values generated from one single draw of...
getFR: FR test for a single cell population pair comparison
getFRest: FR tests to compare two flow cytometry samples
getFRmat: FR tests to compare two flow cytometry samples
makeDistmat: Generate a similarity matrix quantifying similarity between...
statCrossLists: summary statistic across elements of lists
See all...

All man pages Function index File listing

Man pages

flowMap-package: Flow cytometry data cross-sample comparison
frstats-class: FR statistics and p-values generated from one single draw of...
getFR: FR test for a single cell population pair comparison
getFRest: FR tests to compare two flow cytometry samples
getFRmat: FR tests to compare two flow cytometry samples
makeDistmat: Generate a similarity matrix quantifying similarity between...
statCrossLists: summary statistic across elements of lists

Functions

Files

DESCRIPTION
NAMESPACE
NEWS
R
R/classes_and_methods.r
R/flowMap-package.r
R/getFR.r
R/getFRest.r
R/getFRmat.r
R/makeDistmat.r
R/makeFRMST.r
R/statCrossLists.r
R/utils.R
README.md
build
build/vignette.rds
inst
inst/doc
inst/doc/flowMap.R
inst/doc/flowMap.Rnw
inst/doc/flowMap.pdf
inst/extdata
inst/extdata/refData
inst/extdata/refData/sample1.txt
inst/extdata/sample.txt
inst/extdata/sample1.txt
inst/extdata/sample2.txt
man
man/flowMap-package.Rd
man/frstats-class.Rd
man/getFR.Rd
man/getFRest.Rd
man/getFRmat.Rd
man/makeDistmat.Rd
man/statCrossLists.Rd
vignettes
vignettes/flowMap.Rnw
vignettes/flowMap.bib
flowMap documentation built on May 20, 2017, 10:16 p.m.

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