RchyOptimyx: Optimyzed Cellular Hierarchies for Flow Cytometry
Version 2.16.0

Constructs a hierarchy of cells using flow cytometry for maximization of an external variable (e.g., a clinical outcome or a cytokine response).

AuthorAdrin Jalali, Nima Aghaeepour
Bioconductor views FlowCytometry
Date of publicationNone
MaintainerAdrin Jalali <adrin.jalali@gmail.com>, Nima Aghaeepour <naghaeep@gmail.com>
LicenseArtistic-2.0
Version2.16.0
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("RchyOptimyx")

Getting started

Package overview

Popular man pages

HIVData: HIVData
merge: Merges two OptimizedHierarchy objects.
plot: Plots an optimized cellular hierarchy
RchyOptimyx: Gating Hierarchy Optimization for Flow Cytometry
RchyOptimyx-package: Gating Hierarchy Optimization for Flow Cytometry
summary-methods: ~~ Methods for Function summary ~~
See all...

All man pages Function index File listing

Man pages

HIVData: HIVData
merge: Merges two OptimizedHierarchy objects.
plot: Plots an optimized cellular hierarchy
RchyOptimyx: Gating Hierarchy Optimization for Flow Cytometry
RchyOptimyx-package: Gating Hierarchy Optimization for Flow Cytometry
summary-methods: ~~ Methods for Function summary ~~

Functions

HIVData Man page
LogRankPvals Man page
OverlapScores Man page
PhenoCodes Man page
RchyOptimyx Man page
RchyOptimyx,character,numeric,character,numeric,logical-method Man page
RchyOptimyx-methods Man page
RchyOptimyx-package Man page
marker.names Man page
merge Man page
merge,OptimizedHierarchy,OptimizedHierarchy-method Man page
merge-methods Man page
plot Man page
plot,OptimizedHierarchy,ANY-method Man page
plot,OptimizedHierarchy-method Man page
summary,OptimizedHierarchy-method Man page
summary-methods Man page

Files

DESCRIPTION
NAMESPACE
R
R/OptimizedHierarchy.R
R/RchyOptimyx.R
R/getNodeNumber.R
R/merge.R
build
build/vignette.rds
data
data/HIVData.rda
inst
inst/NEWS
inst/doc
inst/doc/RchyOptimyx.R
inst/doc/RchyOptimyx.Rnw
inst/doc/RchyOptimyx.pdf
man
man/HIVData.Rd
man/RchyOptimyx-package.Rd
man/RchyOptimyx.Rd
man/merge.Rd
man/plot.Rd
man/summary-methods.Rd
src
src/RchyOptimyx.cpp
src/dataRead.cpp
src/dataRead.h
src/exceptions.h
src/graehl
src/graehl/2heap.h
src/graehl/graph.h
src/graehl/kbest.h
src/graehl/list.h
src/graehl/readme.txt
src/graehl/sample.graph
src/mystring.cpp
src/mystring.h
src/numberGenerator.cpp
src/numberGenerator.h
vignettes
vignettes/RchyOptimyx.Rnw
vignettes/RchyOptimyx.bib
RchyOptimyx documentation built on May 20, 2017, 10:36 p.m.

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