RchyOptimyx: Optimyzed Cellular Hierarchies for Flow Cytometry

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Constructs a hierarchy of cells using flow cytometry for maximization of an external variable (e.g., a clinical outcome or a cytokine response).

Author
Adrin Jalali, Nima Aghaeepour
Date of publication
None
Maintainer
Adrin Jalali <adrin.jalali@gmail.com>, Nima Aghaeepour <naghaeep@gmail.com>
License
Artistic-2.0
Version
2.14.0

View on Bioconductor

Man pages

HIVData
HIVData
merge
Merges two OptimizedHierarchy objects.
plot
Plots an optimized cellular hierarchy
RchyOptimyx
Gating Hierarchy Optimization for Flow Cytometry
RchyOptimyx-package
Gating Hierarchy Optimization for Flow Cytometry
summary-methods
~~ Methods for Function summary ~~

Files in this package

RchyOptimyx/DESCRIPTION
RchyOptimyx/NAMESPACE
RchyOptimyx/R
RchyOptimyx/R/OptimizedHierarchy.R
RchyOptimyx/R/RchyOptimyx.R
RchyOptimyx/R/getNodeNumber.R
RchyOptimyx/R/merge.R
RchyOptimyx/build
RchyOptimyx/build/vignette.rds
RchyOptimyx/data
RchyOptimyx/data/HIVData.rda
RchyOptimyx/inst
RchyOptimyx/inst/NEWS
RchyOptimyx/inst/doc
RchyOptimyx/inst/doc/RchyOptimyx.R
RchyOptimyx/inst/doc/RchyOptimyx.Rnw
RchyOptimyx/inst/doc/RchyOptimyx.pdf
RchyOptimyx/man
RchyOptimyx/man/HIVData.Rd
RchyOptimyx/man/RchyOptimyx-package.Rd
RchyOptimyx/man/RchyOptimyx.Rd
RchyOptimyx/man/merge.Rd
RchyOptimyx/man/plot.Rd
RchyOptimyx/man/summary-methods.Rd
RchyOptimyx/src
RchyOptimyx/src/RchyOptimyx.cpp
RchyOptimyx/src/dataRead.cpp
RchyOptimyx/src/dataRead.h
RchyOptimyx/src/exceptions.h
RchyOptimyx/src/graehl
RchyOptimyx/src/graehl/2heap.h
RchyOptimyx/src/graehl/graph.h
RchyOptimyx/src/graehl/kbest.h
RchyOptimyx/src/graehl/list.h
RchyOptimyx/src/graehl/readme.txt
RchyOptimyx/src/graehl/sample.graph
RchyOptimyx/src/mystring.cpp
RchyOptimyx/src/mystring.h
RchyOptimyx/src/numberGenerator.cpp
RchyOptimyx/src/numberGenerator.h
RchyOptimyx/vignettes
RchyOptimyx/vignettes/RchyOptimyx.Rnw
RchyOptimyx/vignettes/RchyOptimyx.bib