RchyOptimyx: Optimyzed Cellular Hierarchies for Flow Cytometry

Constructs a hierarchy of cells using flow cytometry for maximization of an external variable (e.g., a clinical outcome or a cytokine response).

AuthorAdrin Jalali, Nima Aghaeepour
Date of publicationNone
MaintainerAdrin Jalali <adrin.jalali@gmail.com>, Nima Aghaeepour <naghaeep@gmail.com>
LicenseArtistic-2.0
Version2.14.0

View on Bioconductor

Functions

HIVData Man page
LogRankPvals Man page
marker.names Man page
merge Man page
merge-methods Man page
merge,OptimizedHierarchy,OptimizedHierarchy-method Man page
OverlapScores Man page
PhenoCodes Man page
plot Man page
plot,OptimizedHierarchy,ANY-method Man page
plot,OptimizedHierarchy-method Man page
RchyOptimyx Man page
RchyOptimyx,character,numeric,character,numeric,logical-method Man page
RchyOptimyx-methods Man page
RchyOptimyx-package Man page
summary-methods Man page
summary,OptimizedHierarchy-method Man page

Files

RchyOptimyx/DESCRIPTION
RchyOptimyx/NAMESPACE
RchyOptimyx/R
RchyOptimyx/R/OptimizedHierarchy.R RchyOptimyx/R/RchyOptimyx.R RchyOptimyx/R/getNodeNumber.R RchyOptimyx/R/merge.R
RchyOptimyx/build
RchyOptimyx/build/vignette.rds
RchyOptimyx/data
RchyOptimyx/data/HIVData.rda
RchyOptimyx/inst
RchyOptimyx/inst/NEWS
RchyOptimyx/inst/doc
RchyOptimyx/inst/doc/RchyOptimyx.R
RchyOptimyx/inst/doc/RchyOptimyx.Rnw
RchyOptimyx/inst/doc/RchyOptimyx.pdf
RchyOptimyx/man
RchyOptimyx/man/HIVData.Rd RchyOptimyx/man/RchyOptimyx-package.Rd RchyOptimyx/man/RchyOptimyx.Rd RchyOptimyx/man/merge.Rd RchyOptimyx/man/plot.Rd RchyOptimyx/man/summary-methods.Rd
RchyOptimyx/src
RchyOptimyx/src/RchyOptimyx.cpp
RchyOptimyx/src/dataRead.cpp
RchyOptimyx/src/dataRead.h
RchyOptimyx/src/exceptions.h
RchyOptimyx/src/graehl
RchyOptimyx/src/graehl/2heap.h
RchyOptimyx/src/graehl/graph.h
RchyOptimyx/src/graehl/kbest.h
RchyOptimyx/src/graehl/list.h
RchyOptimyx/src/graehl/readme.txt
RchyOptimyx/src/graehl/sample.graph
RchyOptimyx/src/mystring.cpp
RchyOptimyx/src/mystring.h
RchyOptimyx/src/numberGenerator.cpp
RchyOptimyx/src/numberGenerator.h
RchyOptimyx/vignettes
RchyOptimyx/vignettes/RchyOptimyx.Rnw
RchyOptimyx/vignettes/RchyOptimyx.bib

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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