RchyOptimyx-package: Gating Hierarchy Optimization for Flow Cytometry

In RchyOptimyx: Optimyzed Cellular Hierarchies for Flow Cytometry

Description

RchyOptimyx is a computational tool which determines the minimal sets of markers that can identify a target population within a given purity standard. This can enable panel redesign using smaller subsets of markers, with consequent savings on reagents, potential for adaptation to older instruments, or the addition of other markers of interest to the panel design.

Details

Package:	RchyOptimyx
Type:	Package
Version:	0.99.1
Date:	2011-10-12
License:	Artistic-2.0
LazyLoad:	yes

See the RchyOptimyx function.

Author(s)

Nima Aghaeepour <[e-mail]> and Adrin Jalali <[e-mail]>

References

D. Eppstein, Finding the k shortest paths, SIAM J. Comput., 1998 - Citeseer.

See Also

RchyOptimyx

Examples

data(HIVData)

res<-RchyOptimyx(PhenoCodes, -log10(LogRankPvals), '2000102001', 5,FALSE) 
plot(res,phenotypeCodes=PhenoCodes,phenotypeScores=-log10(LogRankPvals),marker.names=marker.names)

RchyOptimyx documentation built on Nov. 8, 2020, 5:27 p.m.